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current user: public |
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Query: gi|16082697|ref|NP_395143.1| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92], from Y.pestis |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . | |||||||
# | Score | Template | Links and tools | %id | First | MKISSFISTSLPLPTSVSGSSSVGEMSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFIQRMFSEGSHKPVVTPAPTPAQMPSPTSFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGELQAEASAILNTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLSLM | Last |
1 | -60.100 | 1hy5_A mol:protein length:136 YERSINIA PESTIS VIRULENCE PROTEIN YOPE | ali model follow.. | 100 | 1 | .........................................................................................APTPAQMPSPTSFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGELQAEASAILNTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLSLM | 130 |
2 | -48.100 | 1r4t_A mol:protein length:153 exoenzyme S | ali model follow.. | 24 | 2 | ..........................................................................................SASSAVVFKQMVLQQALPMTLKGLDK-ASELATLTPEGLAREHSRLASGDGALRSLSTALAGIRAGSQEESRIQAGRLLERSIGGIALQQWGTTGGAASQLVASPELRREITDQLHQVMSEVALLRQAV | 132 |
3 | -23.800 | 1g4u_S mol:protein length:383 PROTEIN TYROSINE PHOSPHATASE SPTP | ali model follow.. | 30 | 1 | ...............................................................................................NDVGAESKQPLLDIALKGLKRTLPQLEQMDGNSLRENFQEMASGNGPLRSLMTNLQNLNKIPEKQLNDYVTTLTNIQVGVARFSQWGTCGGEVERWVASTHELTQAVKKIHVIAKELKNV.... | 123 |
4 | -11.400 | 4jmf_A mol:protein length:50 Exoenzyme T | ali model follow.. | 26 | 1 | .............................EARQVATPREAQQLAQRQEAPKGEGLLSRLGAALARPFVAIIEWLGKLLG............................................................................................................................................ | 50 |
5 | -10.300 | 1l2w_I mol:protein length:69 Outer membrane virulence protein yopE | ali model follow.. | 100 | 2 | .................SGSSSVGEMSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFIQRMFSEGSHKP...................................................................................................................................... | 69 |
6 | -7.820 | 4b8c_D mol:protein length:727 GLUCOSE-REPRESSIBLE ALCOHOL DEHYDROGENASE TRANSCRIPTIONAL EFFECTOR | ali model follow.. | 10 | 130 | VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVSTPLTPK-----ELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL---------TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGS----------------CFQLKYFYFFDNMVTTLPWEFGNLCNL. | 318 |
7 | -7.360 | 5z0r_A mol:protein length:445 Extracellular solute-binding protein family 1,viral genome protein | ali model follow.. | 20 | 356 | ...........................................................................................................QTVDEALKDAQTRITVSPFGGLKRLPAGLLLGHGPIRMVLAILAFLR-------------TAIKPSLGL-INRWGSVG-------------KEAMEIIKKFKKDLAAMLRII | 442 |
8 | -7.210 | 5ygh_A mol:protein length:76 Capsid protein | ali model follow.. | 19 | 6 | ..............................................................................................................................GGLKRLPAGLLLGHGPIRMVLAILAFL-------------RFTAIKPSLGLINRWGSVG------------KKEAMEIIKKFKKDLAAMLRII | 73 |
9 | -7.190 | 1sfk_A mol:protein length:76 Core protein | ali model follow.. | 13 | 6 | ..............................................................................................................................TGLKRAMLSLIDGRGPTRFVLALLAFF-------------RFTAIAPTRAVLDRWRSVN------------KQTAMKHLLSFKKELGTLTSAI | 73 |
10 | -6.800 | 1r6r_A mol:protein length:100 Genome polyprotein | ali model follow.. | 17 | 5 | ......................................................................................................RKKARNTPFNMLKRERNRVSTVQQL-TKRFSLGMLQGRGPLKLFMALVAFLR-------------FLTIPPTAGILKRWGTIK-------------SKAINVLRGFRKEIGRMLNIL | 95 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |