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Query: gi|16082705|ref|NP_395151.1| hypothetical protein (YPCD1.15c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150
# Score Template Links and tools%idFirst MVELCRLLKITRSVYSASLNFRVDVKRLQLRELHQQSRGAAGSRTLSLLMRQSGYNVVRWLARRLMRECGLASRQPGKPRYRGEREVSLASPDLLKRQFKPSEPNRVWSGYISYIKVNGGWCYLALVIDLYSRRIVGSAISSSPDAELVCRALast
1 -16.3004fcy_A mol:protein length:529 Transposase  ali model follow..  11  55FATVAGHYQVSASTLRDKYYQ-DEDAWQFLIADYLRPEKRKCYERLELAAREHGWSISRATAFRRIQQLDEAMVVACREGEHALMHLIP----AQQRTVEHLDAMQWINGD-VFVRWFNG--KTWFWQDVKTRKILGWRCDVSENIDSIRLS 241
2 -11.3005cj9_A mol:protein length:146 Arginine repressor  ali model follow..  20  1.......................GSRHIKIREI--ANNDVETQDELVEQLKAAGYNVTQATVSRDIKELHLVKVPDGRYKYSLPADQRFNPLQKLKRGLVDSFVSIDRTDNLIVMKTLPGNAAIGALIDLDWTEIMG............... 117
3 -10.6001b4a_A mol:protein length:149 ARGININE REPRESSOR  ali model follow..  19  2.....................NKGQRHIKIREI--MSNDIETQDELVDRLREAGFNVTQATVSRDIKEMQLVKVPNGRYKYSLPSDQRFNPLQKLKRALVDVFIKLDGTGNLLVLRTLPGNAAIGVLLDLDWDEIVG............... 120
4 -10.3001f9n_A mol:protein length:149 ARGININE REPRESSOR/ACTIVATOR PROTEIN  ali model follow..  18  2.....................NKGQRHIKIREI--TSNEIETQDELVDMLKQDGYKVTQATVSRDIKELHLVKVPNGSYKYSLPADQRFNPLSKLKRALMDAFVKIDSASHMIVLKTMPGNAAIGALMDLDWDEMMG............... 120
5 -10.2005unk_A mol:protein length:62 Sleeping Beauty transposase  ali model follow..  13  3....................MVLSPRDERTLVRKVQINPRTTAKDLVKMLEETGTKVSISTVKRVLYRHNLKGRSARK.......................................................................... 60
6 -9.5503ere_D mol:protein length:170 Arginine repressor  ali model follow..  17  17.....................NRAGRQARIVAI--SSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGGTGSPVRGVSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAYLASAIDAALPQVVG............... 141
7 -9.3802mt3_A mol:protein length:84 RNA polymerase sigma-54 factor  ali model follow..  12  3.....................SSTAIRALVKKL-ENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLVANSSSVDKLAA............................................................ 75
8 -9.3706fge_A mol:protein length:348 Zinc finger with UFM1-specific peptidase domain protein  ali model follow..  8  135FQMLLSSLLQNDAYNDCLKGMLIPKIQSMIEDAWKEGFDPQGASQLNNRLQGTKAWIGACEVYILLTSLRVKCHIVDFHKSTGPLGTHPRLFEWILNYYSSEGEGSP-----KVVCTSKPPIYLQ---QGHSRTVIGIEEKKNRTLCLLI.. 280
9 -9.3503o4n_A mol:protein length:150 integrase  ali model follow..  16  5....................................................................................................GLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQ... 53
10 -8.7201asu_A mol:protein length:162 AVIAN SARCOMA VIRUS INTEGRASE  ali model follow..  16  6...................................................................................................RGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQ... 55
FFAS is supported by the NIH grant R01-GM087218-01
1 4 4 8 1 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.