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Query: gi|16082708|ref|NP_395154.1| Yop targeting protein (YPCD1.19c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFIKDTYNMRALCTALEQSAPDTIINTSKEENNSYYCATAHLLRTDVCSLVNRVGIEPLKSGSILSTLEELWQAVGIVYRLYEWQHVSDIDTNFKKLPNNSDFGLVFSVLDCDIEYVFIGKKDSEGNIEFYDPKNSLLIENDDIKKYLYDEDFHRFCIMLIISKSELEELSRESCDQECIMGLast
1 -10.9001y4h_A mol:protein length:188 cysteine protease  ali model follow..  6  1..MGSSSQDPDQVQYENTLKNFKIREQQFDNSWCAGFSMAALLNYNAHDIMRTLEQDLPNCATFPNQMIEYGKSQGRDIHY--QEGVPSYNQVDQLTKDNVGIMILAQSVSQNGHALAVAKINDQEKLIYWN.................................................. 149
2 -9.9101cv8_A mol:protein length:174 STAPHOPAIN  ali model follow..  11  1......YNEQYVNKLEN----FKIRETQGNNGWCAGYTMSALLNYHAEAVMRFLGQQFQFTGLTPREMIYFGQTQGRSPQL--LNRMTTYNEVDNLTKNNKGIAILGSRVESAGHAMAVKLNNGQEVIIIWN.................................................. 141
3 -9.8601pxv_A mol:protein length:183 cysteine protease  ali model follow..  8  4..........DQVQYENTLKNFKIREQQFDNSWAAGFSMAALLNYNAHDIMRTLYPEVSEQATFPNQMIEYGKSQGRDIHY--QEGVPSYNQVDQLTKDNVGIMILAQSVSHLGHALAVAKINDQEKLIYWN.................................................. 144
4 -7.3901x9y_A mol:protein length:367 cysteine proteinase  ali model follow..  8  209.................................CAGFSMAALLNYNAHDIMRTSEQDLPNCATFPNQMIEYGKSQGRDIHY--QEGVPSYNQVDQLTKDNVGIMILAQSVSQNGHALAVAKINDQEKLIYWN.................................................. 326
5 -7.2503k8u_A mol:protein length:156 Putative ABC transporter, ATP-binding protein ComA  ali model follow..  8  14..............................TRDCGPAVLASVAKYSIAYLRELSKTNK--QGTTALGIVEAAKKLGFETRSIKADMTLFDYNDLT--------FIVHVIKGKRLQHYYVVYGSQNNQLIIGDPDPSVKVTRMSKERF................................... 127
6 -7.1305lq6_A mol:protein length:219 Virulence protein vsdE  ali model follow..  14  39LSIESKYPQNLSRDNLKQMARYVNNTYVHYSGNCVLLSACLHYNIH-QDILSSKNTASPTVGLDSAIVDKIIHELNQSYSLNSIDEVEKEILNRYDIKRESSFIIIIGESRHDFNAVVISEYDKKPYVQFIDSTSNILPSLQEIKKHFSSSGEFYVRAY....................... 214
7 -7.1004wx4_A mol:protein length:205 Protease  ali model follow..  13  2............................................................SGSSEQELAAIVRDLGCGPYFLGTHDKRFPGFLAGNKLACAIVNTAGRETGGV-HWLAFGWNPRSRTCYMFDPFGFSDRRLKQIYSFEYEAMLRRSALALSPDRCLSLEQSTQTVQGAC--G 124
8 -6.9803b21_A mol:protein length:220 ORF169b  ali model follow..  14  27...EGNVNVKKLLESLNSKSLGKMINPSGGDGNCSGCALHAMLGYGVREAPVPNEISEYMTGFFHRHLEQIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQAT---HWIAGFNDGEKIMFLDVQTGK............................................. 173
9 -6.8503oe3_A mol:protein length:98 Putative periplasmic protein  ali model follow..  10  1.....................................................................................ASQEISKSIYTCNDNQVMEVIYVNTEAGNAYAIISQVNEMIPMRLMKMASG--------ANYEAIDKNYTYKLYTKGKTAELVEGDDKPVLSNC... 86
10 -6.8103b79_A mol:protein length:129 Toxin secretion ATP-binding protein  ali model follow..  8  12...................................LIYVSRYYGLANSPEALVNGLPLSDGKLTPFLLPRAAERAGLVAKENRAELEKISSLILPAI-KGGDSCVLNSINMETREAEVTTLESGMVPISI.................................................... 108
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.