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Query: gi|16082711|ref|NP_395157.1| hypothetical protein (YPCD1.22c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst MQHPVSFPSFSFHDNSIFCNKPIVGTMNINADHEKNLKVSIIYKIQLIGGITEILNGGVINWGIFNLVGYFKSSISLIKIIIIDNTNLVMLYVKIWINNENFLIYSELKTNELLYKPYLLNLIDIIVTMLast
1 -6.9305ix3_A mol:protein length:168 Diamine N-acetyltransferase  ali model follow..  17  57..............FIVEDENQVVGIVELVEINYIHRNCEIQIIIK-----PEFSGKGYAKFAFEKAIIYAFNILNMHKIVDADNKKAIHIYESEGFKTEGLL-YKDAYFMSLLKSEYIL......... 168
2 -6.9101qry_A mol:protein length:80 PROTEIN (HOMEOBOX VENTRAL NERVOUS SYSTEM DEFECTIVE PROTEIN)  ali model follow..  19  45.................................................................................LTSLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGHP............ 80
3 -6.8501nk2_P mol:protein length:77 HOMEOBOX PROTEIN VND  ali model follow..  19  42.................................................................................LASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGHP............ 77
4 -6.7605edn_A mol:protein length:76 Homeobox protein Hox-B13  ali model follow..  20  38..............................................................................RRKISAATSLSERQITIWFQNRRVKEKKVLAKVKNSATP............ 76
5 -6.6205z56_X mol:protein length:396 Smad nuclear-interacting protein 1  ali model follow..  19  264FKNDEVLPVMYIHRQSAYLLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRADGTVGRRVKPY---------------IIDLGSGN-------TFLNNKRI--YYELKEKDVL-REYVL......... 369
6 -6.3603pyi_B mol:protein length:170 Spindle assembly abnormal protein 6  ali model follow..  18  51...........................................................................KELKFEISRSDDFEFLFSET-LNNEKY---QILARDHDLFDAFPKVIIQHL... 100
7 -6.3502kt0_A mol:protein length:84 Homeobox protein NANOG  ali model follow..  24  52..............................................................................MQELSNILNLSYKQVKTWFQNQRMKSKRWQKNN.................. 84
8 -6.3202da4_A mol:protein length:80 Hypothetical protein DKFZp686K21156  ali model follow..  25  45.................................................................................VATELNVDCEIVRTWIGNRR............................ 64
9 -6.3105vzt_B mol:protein length:488 F-box only protein 31  ali model follow..  18  436..............................................................................VFILFDEDRFGFV----WLELKSFSLYSRVQATFR-FDEMLKNI....... 483
10 -6.3104qyw_A mol:protein length:119 Chemotaxis protein CheY  ali model follow..  16  2.............................................................................KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVT.. 51
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.