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Query: gi|16082692|ref|NP_395138.1| putative transposase (YPCD1.01) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVALast
1 -15.000PF01710.16; P74195_SYNY3/1-119; Transposase  ali follow..  8  1MYDLDLRIKVIDFIESGGGITKASKIFKVGRATIYRWLGREELGATKVETRQRKINRKELEEDVKNLKERAKKFGVTPASLCYQFKKMKVT......................................................................................................................................................................................................................................................... 97
2 -14.700PF00665.26; P71644_MYCTU/136-254; Integrase core domain  ali follow..  8  9...........................................................................................................................IEADTVAHCGPSLIARTLTMTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDC-------------GGEFINHDVAGWLQARDIAQTRSRPYQKNDQAHVESKNNHVVRKH................................................................................................ 119
3 -14.000PF11427.8; B4MU89_DROWI/3-52; Tc3 transposase  ali follow..  26  4SLSDYEQGIILGMHESGSKISEIATRLNRHRNCISRFLKNPS.......................................................................................................................................................................................................................................................................................................... 45
4 -13.900PF13683.6; Q7DB06_CAUVC/199-265; Integrase core domain  ali follow..  16  1......................................................................................................................................................................................................................HRVAWHYIAPGKPTQNGFVESFNGRMRDELL--------NETLFFGLDHARQKLAAWAEDYNTRRPHSSIGYQT.................................................... 66
5 -13.800PF02914.15; TRA_HAEIN/267-485; Bacteriophage Mu transposase  ali follow..  12  14........................................................................................................................GYQHNVWVRFPDGEIKRPKTWLWQDVRTRKVLARTDKSENTDTIRLSLLDVISRY-GLPKHLTIDNANKKMTGGVKNRYRYQVNENEVQGIIPALGIELHWTSIQFGKGRGQIERAFSHGGLGDYVPDYDGKNGAEQPVDYATFLMALEQGIQQWNNVGNRLTEKSSYAEAFERD............................................. 217
6 -11.900PF13936.6; B1YJ62_EXIS2/2-45; Helix-turn-helix domain  ali follow..  30  5.LTISERVKIETYLELGFSVRKIAGRLGRQPSTISRELKRN........................................................................................................................................................................................................................................................................................................... 44
7 -11.900PF08822.11; B0USA4_HISS2/1-164; Protein of unknown function (DUF1804 topsan)  ali follow..  11  1MAHDEKVRAVRRYYFDRFTLEQSAQKADVSFGTARRWKAQALNKGDDWDKARDVHIMAG......................................................................................................................................................................................................................................................................................... 61
8 -11.400PF07141.11; O80103_9CAUD/1-174; Putative bacteriophage terminase small subunit  ali follow..  16  15MYEEPLFSQIIDKIESGCNDREIYTSLHCSAKTFRKWRDDNIKAYDEAKGIARGNLLELAESALAS.................................................................................................................................................................................................................................................................................. 80
9 -10.600PF02796.15; UVP1_ECOLX/144-189; Helix-turn-helix domain of resolvase  ali follow..  30  6.LSEDDINEMKILLADPMTVGAVAKRFNVSRMTIYRYTTKG........................................................................................................................................................................................................................................................................................................... 46
10 -10.300PF13309.6; K4INN7_BIFAP/199-261; HTH domain  ali follow..  33  20MTKSHKKEVIRQAKEQGFAAETLADRLQISRFTVYNYLK............................................................................................................................................................................................................................................................................................................. 63
11 -9.930PF12759.7; Q327B2_SHIDS/42-87; InsA C-terminal domain  ali follow..  31  12.......EQIVEMAHNGAGSCYTARTLKTGINTVIRTLKSSR.......................................................................................................................................................................................................................................................................................................... 46
12 -9.920PF13384.6; D3VHL9_XENNA/22-69; Homeodomain-like domain  ali follow..  26  3..RVCDRIKAVLLASEGWTTQRIAQALRIPESTVSRHLKD............................................................................................................................................................................................................................................................................................................ 40
13 -9.850PF07750.11; Q6N0I8_RHOPA/48-208; GcrA cell cycle regulator  ali follow..  29  4..TDERVEQLKKLWEGGLSASQIAAELGVTRNAVIGKVHRLGLSGRAKSPTSAAPR............................................................................................................................................................................................................................................................................................ 58
14 -9.820PF00196.19; NARP_HAEIN/147-203; Bacterial regulatory proteins, luxR family  ali follow..  33  8.......MGVLRQIATGLSNKQIAAQLFISEETVKVHIRN............................................................................................................................................................................................................................................................................................................ 40
15 -9.760PF13011.6; Q7VU25_BORPE/1-85; leucine-zipper of insertion element IS481  ali follow..  9  9LTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKWLAREGLDGLLDRSSRPHRSPKACAPEQVEHFAQQRRQ.......................................................................................................................................................................................................................................................................... 85
16 -9.730PF04297.14; YOFM_LACLA/3-103; Putative helix-turn-helix protein, YlxM / p13 like  ali follow..  13  17LLTDKQMNYIELYYADDYSLAEIAEEFNISRQAVYDNIKRTEKVLESYEEKSNYVVRNQLLEELMKKYSTDQYLITKLQEI................................................................................................................................................................................................................................................................... 101
17 -9.670PF13022.6; C8VXN7_DESAS/1-124; Helix-turn-helix of insertion element transposase  ali follow..  14  7.LNLAQKRAAEILAGHEMSLAQIAEHVGVSQRTLYRWKHDKAFVAYQNELAEQEDFVAEAYSTLKGMVRKGRSDHSRLKALELVLKNRG........................................................................................................................................................................................................................................................... 99
18 -9.640PF06413.11; A5PMG7_DANRE/87-289; Neugrin  ali follow..  12  10KLSWDAIEQIRYLKQESWTLQRLAEGFSVSPDVISRVLRSTFTPPAARKLKQDAKVSPSSGPQYLKDGKAEQSR.......................................................................................................................................................................................................................................................................... 86
19 -9.590PF16509.5; D6CK40_XANAP/7-92; TrfB plasmid transcriptional repressor  ali follow..  17  16.LKERNVEAIRQIMVESRQQTDVADELGVTKKAVSQMVGK............................................................................................................................................................................................................................................................................................................ 54
20 -9.500PF08535.10; Q0VMS5_ALCBS/150-241; KorB domain  ali follow..  13  1..............SKGWKVTDIAKQLGKNKSWLARYRLLYQSNDALKTLYTSGLCRD---NALVELARAQDKHPADVSRFIQEALSGEATLSRSAVQGFLNSLKGAS........................................................................................................................................................................................................................................ 92
21 -9.460PF13518.6; B1VKL0_STRGG/33-84; Helix-turn-helix domain  ali follow..  20  1.....RRAQMVLLSAQGMPVAKIAEVSFTSDDRIRDVIHN............................................................................................................................................................................................................................................................................................................ 35
22 -9.460PF02001.16; Y1243_METJA/1-100; Protein of unknown function DUF134 topsan  ali follow..  12  36ILSVDELEAIRLVDYLDYTQEEASKLMGISRRVLWSLLTEGRKKIADALINGKAIVIE.......................................................................................................................................................................................................................................................................................... 93
23 -9.290PF10668.9; A6LTX9_CLOB8/1-67; Phage terminase small subunit  ali follow..  18  8..DRDKAYEIFKEHGGNIQNRKIANILDIPEKTISGWKVKDKWNEKLNGVLQTKIR............................................................................................................................................................................................................................................................................................ 61
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 9 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;