current user: public
If you have questions about the server, please let us know.

Query: gi|16082693|ref|NP_395139.1| transposase/IS protein (YPCD1.02) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .
# Score Template Links and tools%idFirst MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPELast
1 -73.900PF01695.17; Y4IQ_SINFN/60-238; IstB-like ATP binding protein  ali follow..  31  1.......................................................HRRIERHLAEAHLPPGKTLESFAFDAVPMVSKAQVMAIAAGDWLAKGANILLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKF-DLLILDDLAYVTKDQAETSVLFELISARYERRSIMITANQPFGEWNRVF-PDPAMTLAAVDRLVHHATIF........................ 179
2 -17.100PF00308.18; DNAA_STRCO/317-535; Bacterial dnaA protein  ali follow..  16  1...................................................................LNPKYLFDTFVIGASNRFAHAAAVAVAEAP--KAYNPLFIYGESGLGKTHLLHAIGHYARSLGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRY-REMDILLVDDIQFLADKESTQEEFFHTFNTLHNNKQIVLSSDRPPKQ-----------LVTLEDRLRNRGLITDVQPPELETRIAILRKKAVQEQ.. 183
3 -15.000PF00004.29; LON_BRECH/351-493; ATPase family associated with various cellular activities (AAA)  ali follow..  19  1........................................................................................................LCLVGPPGVGKTSLARSVARALGREFVRISLGGVRDEAERTYVGALPGRIIQGMKQAGTINPVFLLDEIDKLASDFRGASALLEVLDPNQNDKFSDHYIEETYDLTNVMFITTANSLDTIPRPLLDRMEVISISG.................... 142
4 -15.000PF00910.22; A7M6L1_9SECO/473-576; RNA helicase  ali follow..  11  1........................................................................................................VYAYGESRTGKTLVVDKL---------------ITDFQNHFGLGKDTVYSRNPIDQYYRRQPIVSIDDFGAVTCDPSMEAQMIPLVSSMFDSKFIFCSSNL...................................................... 104
5 -13.500PF12775.7; A0A0L8HIS0_OCTBM/1630-1811; P-loop containing dynein motor region  ali follow..  12  29.................................................................................................SIEQNMPILFVGPTGTGKSSYVQDKLMKGISKELNFSAQTSANQVQTIIMTSLAKRRRGVFGPLIGKTAIIFVDDMNMPAKEVYGAQPPIELLRQFFDHGHWYDLKDTSKLILKDIMGPPGGARCDVTPRFLRHFNIVAMN..................... 180
6 -12.700PF03266.15; NTPTH_METAC/3-167; NTPase  ali follow..  16  1.......................................................................................................RIAVTGSPGVGKSTVVAKTAEKLAEKGFKIGGIRTAEIRKEHVNLDDLERIGANAVRNALACDLVVIDEIGPMELISQS---FVSAVEEVLESDKPVLAV-------------HHSSRHPLAQRFRKGFEVLTVDKGN.................. 156
7 -12.400PF07728.14; Q82S33_NITEU/475-632; AAA domain (dynein-related subfamily)  ali follow..  15  1.......................................................................................................NLILQGPPGTGKTWLAKRLAFALMGQKDDSKFVRGWRPTGEGKLSLADGVFMEAIKAASKDPSVVVIEEINRGNPAQIFGELLTLLEAGKRTPNEALELCYPDADGKRRPVHIPENL---VVGTMNIADRSLALVDLALRRR.............. 157
8 -11.900PF04665.12; Q6TUP8_YMTV5/6-246; Poxvirus A32 protein  ali follow..  20  2..........................................................................................KHFYRKSLLKHPFRIALVGGSGSGKTAYLLSLFNTFVEKYRHIFLFTPVDYSLITTKQKIEKYVKKQGNDKTTEMFLLILDDMGDKQIRSSCLLDFLN--HGRHLNTSIILLCQ....................................................... 136
9 -11.800PF02562.16; A0LK93_SYNFM/124-328; PhoH-like protein  ali follow..  14  2....................................................................................ITPKSVKQKEYIEAIRHYDIVFGVGPAGTGKTYLAMAMAVAAMTKDVRRIVLVRPAVEAGEKLGFLPGDLAEKVNPYLRPLYDALHDMMDFERATGLLQRGAIEVAPLAFMRGRTLNDAFVILDEAQNTTTEQ---MKMFLTRLGLGSKAV-ITGDITQI............... 158
10 -11.800PF01637.18; A8M939_CALMQ/15-228; ATPase domain predominantly from Archaea  ali follow..  14  5......................................................................................EVAIRQIEKLAEKGTWNPVVIYGPEGCGKSAFLKQAVEVLGEYDYSVVKVSPLEYSEELRGLFRDSLLYDVVRRRIRRKIALLADDVFQAIGLDKAELLVKRLLNVDYERIVVIVATS....................................................... 156
11 -11.700PF05496.12; RUVB_BACAN/21-179; Holliday junction DNA helicase RuvB P-loop domain  ali follow..  20  35.......................................................................................................HVLLYGPPGLGKTTLANIIANEM------------VNVRTTSGPAIERPGDLAAVLTSLQPGDVLFIDEI---RLHRSIEEVLYPAMED-KGPSARSVRLDLPPFTLVGATTRAGALSAPLRDRF............................... 153
12 -11.600PF13238.6; A0B5Y2_METTP/3-117; AAA domain  ali follow..  13  1........................................................................................................IALTGTPGTGKTTVSGLLPFRVVRECLEADMDALEEKIEEIERSCGDDVLIIEGHFAHHFADEAIV-------LRLHPNVLRRRLEARGYSASKI-----------------RENVEAEAID................................. 115
13 -11.500PF06745.13; O29463_ARCFU/20-274; KaiC  ali follow..  17  29..................................................................................................IPHLAVMNITGVPDTGKSLLAEQFAITQAGSGYRVLYVTVESPANFLYTAMKEKALMETMAYAIKEVTNTIIDSITYEHKEMMARQIVRQFFNKKYRQTGIFVSQKRSAQASESAEAAGGLAVAHIVDGTI.............................. 196
14 -11.500PF13173.6; F9Z5R0_ODOSD/18-152; AAA domain  ali follow..  16  1.....................................................................................................RKPLILNGARQVGKTWLLHEFAKLEYKKEAYVVCRKNNLARQLFSQDFNVDRILRGLVDITPGDTLIILDEIQDIP----EALESLKYFKEEVPEYHIAVAGSLL-----------GISLHQDVSYPVGKVNVINIFPMNFE................ 132
15 -11.400PF07726.11; Q87G66_VIBPA/36-166; ATPase family associated with various cellular activities (AAA)  ali follow..  21  1.......................................................................................................HILVEGPPGLAKTRAVKSLSDCVEGDFHRIQFTP-ADLTGTDIFRPETGEFTFQSGPIFN--SLILADEINRAPAKVQAA--MLEAMAEKQPELFLVMATQNPIE-----QEGTYPLPEAQLDRFL.............................. 130
16 -11.300PF07652.14; Q32ZD8_9FLAV/1675-1822; Flavivirus DEAD domain  ali follow..  19  1..................................................................................................FKKKQLIVLDPHPGAGKT-VLPEFIRQAVERRLWTLALAPTRVVKEIVDLMCHATFTMRLLS-VPNYNMFIMDEAHFTDPSSIAARGYISTKVDMGEASAVFMTATPP..................................................... 137
17 -11.100PF13337.6; R6V945_9CLOT/51-507; Putative ATP-dependent Lon protease  ali follow..  12  108....ISEEYPSKYDRLLCGGIWCIVQLDYEYIEEDKGASPIHIRKLTPIQMPHVDIDELKQGRKAFTKEMDVMLRSIGMEPDTLSYREKWLLLARMPLVENNFNLCELGPRSTGKSHIFKEISPNSI---VSGGQTTVANLFYNMGRKTVG---------LVGLWDCVAFDEVAGINFKDKDGQIMKDYMASGSASASMVFVGNINQSVDVLLFPPEMGTDTAFLDRM............................... 341
18 -10.700PF13479.6; F5YIK8_TREPZ/11-202; AAA domain  ali follow..  15  4.......................................................................................................RCALFGPSGSGKTMTALRMAKGIADTGVPFAVIDTEA-VDDLDGKTVDHYIAAMNECVKAGYKVLVIDSL----------SHAWRELTDEVDRIAQSSVSKNTFSPWAKV----NPKQKRFIDAILNFPGHIIATMRSKTEWVIGEGK........ 150
19 -10.600PF07088.11; GVPD1_HALSA/23-536; GvpD gas vesicle protein  ali follow..  10  1............................................................................................LSQFFMGDAGETLLINGAPGTGKTLFTIRG-LDVLDRDSDVLYVSTRVDQETVHEPFEKLDLDSLLEWIQEIQLTIAFDSWELIYEYKTVTNQLAVLAREE--NIRLMLVTETA----------APSSLEYIVDGVVTLQVKEDDRGRTRRDLRLDKLRGVRIGNR. 199
20 -10.400PF03969.16; ZAPE_ECOLI/4-371; AFG1-like ATPase  ali follow..  19  69......................................................................................................RGLYMWGGVGRGKTWLMDLFYQSLGERKQRLHFHRMLRVHEELTALQQTDPLEIIADRFKAETDVLCFDEFFVSDIT--DAMLLGGLMKALFARGITLVTSNIPPDEYRNGLQRARFL--PAIDAIKQHCDVMNVDAGDYRLRTLTQAH........ 219
21 -10.400PF01443.18; RDRP_TMV/829-1085; Viral (Superfamily 1) RNA helicase  ali follow..  15  1........................................................................................................VLVDGVPGCGKTKLILVPGKQAAEMIRRRANSSGIIVATKDNVKTVDSFMMNFGKSTRCQFKRLFIDEGLMLH-----TGCVNFLVAMSLCEIAYVY--------------GDTQQIPYI................................... 112
22 -10.300PF07724.14; Q7PAG5_RICSI/595-759; AAA domain (Cdc48 subfamily)  ali follow..  19  5.......................................................................................................SFLFLGPTGVGKTELTKALAGFLFDDRNAILRIDMSEYMEKHAISRQGGVLTEAVRR--RPYQVILFDEV--EKAHPDIFNIMLQILDE-FKNTIIVLTSNL...................................................... 125
23 -10.200PF08303.11; Q6CK12_KLULA/389-554; tRNA ligase kinase domain  ali follow..  12  2........................................................................................................LVTIATIGCGKSTVSLTL--------NELFPESWGLVVNDNITSNKTDYIKSALQLFKDGKQFVLADKNNHQFRERAA----VFEWINQYRDSYIPYNCNLQVIALCFVDEVSPEMRALTIDRVMKRGD.......................... 118
24 -10.200PF13604.6; Q3L956_RHOE4/579-769; AAA domain  ali follow..  15  22.........................................................................................................VAVGAAGAGKTTAAKVVARAWEQTNGKVIALGPSAKAADVLGAEIDVEGRTIADILTRDQDLLLVDEAGMA-----SARNLADLTRIATQSGAVVR------------LLGDPLQLASVLRDLAERTDAPFLS-KIHRFKTVGEAAAS...... 166
25 -10.100PF08433.10; O46079_DROME/1-293; Chromatin associated protein KTI12  ali follow..  17  4........................................................................................................VVITGLPASGKSTRARQLRDHFVERGRKVHLISENEAVPKAGFGKNSSDLKSEASRHLNQEDLVILDAGNYIKGYRYE----LYCMSKVSRTTQCTVFTCIPQE................................................... 115
26 -9.350PF05673.13; Q0K6N5_CUPNH/29-287; Protein of unknown function (DUF815 topsan)  ali follow..  14  1...............................................QEAVAFRWRKRQSLFGNIGYLQPVRQLPPIHLDDLKNIERQKDAIVANTRQFVSKNNVLLTGARGTGKSSLIKACLNAFVRDGLRLVEVDKDDL-------GDLGDIVELVAQRPERFVIFCDDL---FEEGESGYKSLKSALDGSVAAQSIYATSNR...................................................... 156
27 -9.290PF13481.6; B2JV40_PARP8/220-401; AAA domain  ali follow..  11  25................................................................................................DVIPAHAVGAVWGASAAAKSFLVLDLAA-ALTECRSFFGHDVFEPVPVLLVSEGNNGLPRRYLAWEKHNGRPVPARLHTLTLDPRDTDDLCEAIETCGITGGVVFPFALATIGLEENSSADMGRAGAALNTLVHHT........................... 177
28 -9.210PF07931.12; Q98FG2_RHILO/59-238; Chloramphenicol phosphotransferase-like protein  ali follow..  15  4........................................................................................................VLLNGVGSAGKSSIARALQTIT---AAPFLHVQMDSFLEMLPDALQDRGMRHAIAAMAGQGNDLIVDDVLCNGELSDCVDLLLEVLEAREARRAEVDTSQSTPLE----------CARRIQQRF............................... 179
29 -9.200PF13177.6; A5VIC8_LACRD/13-171; DNA polymerase III, delta subunit  ali follow..  14  18.....................................................................................................AHAYLFVGPGGSGKMSIAQWLSLRL-PEGRQIKVDEIRRLKAEFSKSAVEGNKK-----------IFIIKDA---KMTNGAANSLLKFIEEPGAGVYIFMLTTNK---------------SAVLPTIRSRTQVIELP..................... 157
30 -9.190PF02399.15; OBP_VZVD/13-828; Origin of replication binding protein  ali follow..  14  2.....................................................ASSTQLARALYGGDLV--SWIKHTHPGISLELQLDVPVKLIKPGMSQTRPVTVVRAPMGSGKTTALLEWLQHALKADISVLVVSTQTLIQRFNDAGLSESLHRVSSEAIDSYDVLILDEV---------MSVIGQLYSPTMRRLSAVDSLYRLLNRCSQIIAMDATVNSQFIDLI............................... 193
31 -9.180PF06309.11; O45271_CAEEL/5-130; Torsin  ali follow..  11  8................................................FETDIFDYLKLHRDLSRFIYGQHLVIDTV----------RSIKSHWHNEHPQKPLVLSFHGGPGTGKNYVTEIIAKNTFRSGLQSPYVKYFVATKDFPNNKHIEDYKLKLKEQLI................................................................................................ 113
32 -9.120PF06068.13; RUVB2_CAEEL/17-361; TIP49 P-loop domain  ali follow..  16  51......................................................................................................RALLVTGEPGAGKTAIAIAISKEL---GEDTPFVSIVASEIYSNEINKTEALTQAFRR---ALGIQIKEETEVLEGEVISLEVDRSANGMGPKVGKLTMRT----TDMETIYDLGSKMVDACLKEKVMPGDVIQVDKASGRVTR............. 184
33 -9.080PF09439.10; SRPB_YEAST/36-221; Signal recognition particle receptor beta subunit  ali follow..  13  1...................................................................................................SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ-ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRLIFMVDSTVDPKKLTTTAEFLVDILSICENGIDILIACNK...................................................... 120
34 -9.030PF17213.3; F6ZLU4_XENTR/1991-2193; Hydin Adenylate kinase-like domain  ali follow..  14  2........................................................................................................IIVHGAPLTGKSSAAVTLA-----QHYNIPCLSIDSVVLDAISDSNSPTGMRARQLCSKA............................................................................................... 56
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 3 0 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Godzik A. Secondary structure prediction using segment similarity. Protein Eng. 1997 Oct;10(10):1143-53.