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Query: gi|16082696|ref|NP_395142.1| secretion chaperone (YPCD1.05c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst MYSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQTSSLISPPRSFSLast
1 -37.100PF05932.13; Q87P37_VIBPA/6-126; Tir chaperone protein (CesT) family  ali follow..  16  2......LLDEFCRLNELPLILEDGNRCQLLVDDFVLYFTATEDDALMLSVAFGELRVRGLELLARANYQRVGSGNLALSLAPNGRQLVLAGRQPTEHLNSANLTVWFHEIIEQTELWQ............ 121
2 -17.100PF07824.12; SIGE_SALTY/3-113; Type III secretion chaperone domain  ali follow..  14  1.....SLLNRLYDALGLDAPEDEP---LLIIDDGIQVYFNESDHTLEMCCPFMPLPDDILQHFLRLNY----TSAVTIGADADNTALVALYRLPQTS-TEEEALTGFELFISNVKQLKEHYA........ 111
3 -11.900PF10722.9; D5UDP5_CELFN/56-183; Putative bacterial sensory transduction regulator  ali follow..  9  3.....ARIASWMSDNQFSYFIDNDGDLGGLWRGRLFYFFLFGQQAEILQVRGRELAIERLEEVLDCNEWNAERIWPKAYVVRDNGRVHVVAEVATHGATDAQLSQILFCGLSTGSMLFDALDE....... 128
4 -6.960PF09346.10; A6CCT7_9PLAN/22-151; SMI1 / KNR4 family (SUKH-1)  ali follow..  11  4....VDAIKQFEVVIGRELPETLKVLLDTVNGGLGALISFNSEDENNILDYLSRPSEGMSSELAP---FAAVGNGNLICLKKNSECVFIWLHGNRSGYDECQLADTFQEFIEV................. 130
5 -5.600PF12864.7; R7NPV4_9BACE/3-241; Protein of unknown function (DUF3822 topsan)  ali follow..  9  139..RFFSTVSPLTEYFAQKSRLGNSKKLYAHVRKHLVEVYCYDKGKLLLINSFPCKQTADCIYYLLYIW--------QLGYNQEKDELQLTGKFKDKEGLLTGLRKYLRQV.................... 239
6 -5.460PF03519.14; W0HTY6_9GAMM/17-94; Invasion protein B family  ali follow..  6  9...................NFDSHSTIALDFNDMPSIYISSSDDDIWLWSRIAEYQDTILEQ.................................................................... 51
7 -4.960PF18270.1; W1ITS9_9GAMM/37-271; Virulence factor Evf  ali follow..  9  112LQSFANFLQRQGDAIRMGLKRNHDHYSTLTL--ASVIEATGLGDQVVYIPKIKLFKIDFDTTNSEVTSNCASNQKVNVKFSYSSCIALF----NYQALETPEVNTAFHDFIIKNE............... 220
8 -4.810PF07348.12; SYDP_PHOLL/6-180; Syd protein (SUKH-2)  ali follow..  12  57.......LNSVEVALDIQLQPAIHDFYTSQLAGDM---VTFEGQRLSLIQVWSEDDFIRLQENLIGHLTMESDDMGIISLCNLTGEVILE---QFGSHKRERLFTDLVGFLGAIE............... 174
9 -4.800PF13947.6; Q9ARW4_ORYSJ/23-130; Wall-associated receptor kinase galacturonan-binding  ali follow..  8  25..........IEPGFVIYCNKTADGSMKPFLINVEVLNISLLHGQTRALNALSTYCYNDVTKSMESSRWSLDFSTWPYRFSNLHNKFVV......................................... 103
10 -4.780PF12305.8; D4ZD41_SHEVD/3-94; Protein of unknown function (DUF3630 topsan)  ali follow..  10  22.DQFDLFAEPLAAAMDARVIERHDGAWLLTFEGTLIQLNYEFYAEICWLSVEAEDEVEVLEYLAS................................................................. 89
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 9 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;