|
current user: public |
|
Query: gi|16082697|ref|NP_395143.1| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92], from Y.pestis |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . | |||||||
# | Score | Template | Links and tools | %id | First | MKISSFISTSLPLPTSVSGSSSVGEMSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFIQRMFSEGSHKPVVTPAPTPAQMPSPTSFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGELQAEASAILNTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLSLM | Last |
1 | -34.100 | PF03545.13; Q9I788_PSEAE/132-201; Yersinia virulence determinant (YopE) | ali follow.. | 39 | 1 | ..............................................................................................................................ERLAKDHTRLASGDGALRSLATALVGIRDGSREASRTQAARLLEQSVGGIALQQWGTAGGAASQHVLSA........................ | 70 |
2 | -23.700 | PF09020.10; YOPE_YERPE/1-126; YopE, N terminal | ali follow.. | 100 | 1 | MKISSFISTSLPLPTSVSGSSSVGEMSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFIQRMFSEGSHKPVVTPAPTPAQMPSPTSFSDSIKQLAAETLPKYMQQLNSLDA............................................................................................. | 126 |
3 | -8.090 | PF01003.19; Q4VIX4_9FLAV/6-123; Flavivirus capsid protein C | ali follow.. | 10 | 8 | .............................................................................................................VVSMLRRGASRVSPLMG--IKRMLNSLLDGRGPIRFVLALLTFFK-------------FTAIAPTKALINRWRSV------------EKGTAMKHLASFKKELGTLIDVV | 90 |
4 | -7.770 | PF05939.13; I2B9D5_SHIBC/4-110; Phage minor tail protein | ali follow.. | 14 | 12 | .............................................................................................................................TQTVSFRVRKSQFGDGYAQFSGDGLNDVNFTGTGEYIGAIKRFLDRHQGVRAF-QWTPPLEAAGLYRCEHYKPVPLGGGNYSLSATFEQAF... | 107 |
5 | -7.400 | PF11274.8; C4JKC3_UNCRE/128-343; Protein of unknown function (DUF3074 topsan) | ali follow.. | 10 | 129 | ...............................................................................................................................SKPCKHPDAPIRKGFIRGQYESVEMIRELPASAVGNSIGGSENEENAN----EWSDPGGNIPRWMVE-------KGTVPSIIADAKKFID.. | 214 |
6 | -6.650 | PF10157.9; A0A212EXV4_DANPL/88-244; BLOC-1-related complex sub-unit 6 | ali follow.. | 13 | 63 | .....................................................................................................................LNDLEY-EAQKIAQSVDNLIEN---LSSILHSNSSLTAENMEVYRDAVGKTCDAMDNNIK---------SMYTILAKGEEVSQAMVPVQAQAARIAEIKRLL | 151 |
7 | -6.060 | PF08502.10; LEU1_GEOKA/376-499; LeuA allosteric (dimerisation) domain | ali follow.. | 17 | 42 | ..................................................................................................................................NEIQEAATGAGSVEALYNTLERLLDYRIESVGGGRDALAQVFV-----IETSGRGTAQDVLEASAKAYINAINRV.............. | 124 |
8 | -5.960 | PF05714.11; O50870_BORBU/248-450; Borrelia burgdorferi virulent strain associated lipoprotein | ali follow.. | 13 | 60 | ...............................................NTERSIRYRRHTYTVLSPLDPHELKEFANIIQD------INKLASVASIFNSFSAIGGALDIVSDHLYFKKDNLDKLDIADLEI-----------LKNSFEQILYIKG----SVAGKAKKLLL------DYKNLKTDINKLKSYSNELNGIKQQALEAENLEELIVSKYK.. | 203 |
9 | -5.860 | PF16169.5; F6AGU1_PSEF1/153-325; Domain of unknown function (DUF4872 topsan) | ali follow.. | 18 | 58 | .............................................................................................................GIRHLANCVEKLDPAQAKYNRLYLTHIVTGGAGFRFMYASLQEAGEKIGDATLREASTRLTA-------DDWRQFASACVRASRSKGEFRPIAEMLRGIAGQERVLMKEL | 173 |
10 | -5.680 | PF02464.17; CINA_MOOTA/255-409; Competence-damaged protein | ali follow.. | 18 | 2 | ......................................................................................................................DTLESVTGAILAARHLTLAVAGGLLAHRVTNIPGSSDYFLGGMVTYSNEAKVKFLGVEPLAARGAVSPEVAAAMAR......................... | 83 |
FFAS is supported by the NIH grant R01-GM087218-01
|
![]() ![]() ![]() ![]() ![]() ![]() |
Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |