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Query: gi|16082697|ref|NP_395143.1| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKISSFISTSLPLPTSVSGSSSVGEMSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFIQRMFSEGSHKPVVTPAPTPAQMPSPTSFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGELQAEASAILNTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLSLMLast
1 -34.100PF03545.13; Q9I788_PSEAE/132-201; Yersinia virulence determinant (YopE)  ali follow..  39  1..............................................................................................................................ERLAKDHTRLASGDGALRSLATALVGIRDGSREASRTQAARLLEQSVGGIALQQWGTAGGAASQHVLSA........................ 70
2 -23.700PF09020.10; YOPE_YERPE/1-126; YopE, N terminal  ali follow..  100  1MKISSFISTSLPLPTSVSGSSSVGEMSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFIQRMFSEGSHKPVVTPAPTPAQMPSPTSFSDSIKQLAAETLPKYMQQLNSLDA............................................................................................. 126
3 -8.090PF01003.19; Q4VIX4_9FLAV/6-123; Flavivirus capsid protein C  ali follow..  10  8.............................................................................................................VVSMLRRGASRVSPLMG--IKRMLNSLLDGRGPIRFVLALLTFFK-------------FTAIAPTKALINRWRSV------------EKGTAMKHLASFKKELGTLIDVV 90
4 -7.770PF05939.13; I2B9D5_SHIBC/4-110; Phage minor tail protein  ali follow..  14  12.............................................................................................................................TQTVSFRVRKSQFGDGYAQFSGDGLNDVNFTGTGEYIGAIKRFLDRHQGVRAF-QWTPPLEAAGLYRCEHYKPVPLGGGNYSLSATFEQAF... 107
5 -7.400PF11274.8; C4JKC3_UNCRE/128-343; Protein of unknown function (DUF3074 topsan)  ali follow..  10  129...............................................................................................................................SKPCKHPDAPIRKGFIRGQYESVEMIRELPASAVGNSIGGSENEENAN----EWSDPGGNIPRWMVE-------KGTVPSIIADAKKFID.. 214
6 -6.650PF10157.9; A0A212EXV4_DANPL/88-244; BLOC-1-related complex sub-unit 6  ali follow..  13  63.....................................................................................................................LNDLEY-EAQKIAQSVDNLIEN---LSSILHSNSSLTAENMEVYRDAVGKTCDAMDNNIK---------SMYTILAKGEEVSQAMVPVQAQAARIAEIKRLL 151
7 -6.060PF08502.10; LEU1_GEOKA/376-499; LeuA allosteric (dimerisation) domain  ali follow..  17  42..................................................................................................................................NEIQEAATGAGSVEALYNTLERLLDYRIESVGGGRDALAQVFV-----IETSGRGTAQDVLEASAKAYINAINRV.............. 124
8 -5.960PF05714.11; O50870_BORBU/248-450; Borrelia burgdorferi virulent strain associated lipoprotein  ali follow..  13  60...............................................NTERSIRYRRHTYTVLSPLDPHELKEFANIIQD------INKLASVASIFNSFSAIGGALDIVSDHLYFKKDNLDKLDIADLEI-----------LKNSFEQILYIKG----SVAGKAKKLLL------DYKNLKTDINKLKSYSNELNGIKQQALEAENLEELIVSKYK.. 203
9 -5.860PF16169.5; F6AGU1_PSEF1/153-325; Domain of unknown function (DUF4872 topsan)  ali follow..  18  58.............................................................................................................GIRHLANCVEKLDPAQAKYNRLYLTHIVTGGAGFRFMYASLQEAGEKIGDATLREASTRLTA-------DDWRQFASACVRASRSKGEFRPIAEMLRGIAGQERVLMKEL 173
10 -5.680PF02464.17; CINA_MOOTA/255-409; Competence-damaged protein  ali follow..  18  2......................................................................................................................DTLESVTGAILAARHLTLAVAGGLLAHRVTNIPGSSDYFLGGMVTYSNEAKVKFLGVEPLAARGAVSPEVAAAMAR......................... 83
FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 2 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. VISSA: a program to visualize structural features from structure sequence alignment. Bioinformatics. 2006 Apr 1;22(7):887-8. Epub 2006 Jan 24.