current user: public

If you have questions about the server, please let us know.

Query: gi|16082698|ref|NP_395144.1| hypothetical protein (YPCD1.07) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .
# Score Template Links and tools%idFirst MDKNKGIVFPPFSINIANIFVPDLSGANRFLACSLLEFLTYLSSVLLLMLWKILNIYIYGLMQHSRNQNIIAKRYIVYTVLFILKTANIRANPVTLSPLast
1 -8.000PF11200.8; A7AQJ9_BABBO/2-370; Protein of unknown function (DUF2981 topsan)  ali follow..  22  3.................GLFY--IAIQQFLLGISLYSVIHYLHPSLTQLAWLLFGTNVLGFMGALKRNIVMECVYLVFSLFLIFLTVLDMAELVHLLP 88
2 -7.660PF10624.9; Q93GM0_SALTY/3-164; Plasmid conjugative transfer entry exclusion protein TraS  ali follow..  18  14............................QFIACYLAEWGVAETGIILLFVLLWQGLFIWLFIQIRKKNNISDEFKFSKGIWYVIMPVCSLLSPL.... 79
3 -7.030PF09323.10; Q5M538_STRT2/1-178; Domain of unknown function (DUF1980 topsan)  ali follow..  14  3....RFLILSGYFELVMYLQV---SGKLNQYINIHYSYLAYISMALSFILALVQLIVWMKKIKVHSHLSGRVAKGTSIVLLAFPVLTGLLVPTVTLD. 92
4 -6.620PF07415.11; LMP2_EBVB9/1-497; Gammaherpesvirus latent membrane protein (LMP2) protein  ali follow..  20  291..........PGGLGTLGAALLTLAAALALLASLILGTLNLTTMFLLMLLWTLVVLLICSSCSSCPLSKILLARLFLYALALLLLASALIAGGSILQ. 377
5 -6.620PF06637.11; F1MHE4_BOVIN/1-440; PV-1 protein (PLVAP)  ali follow..  40  29.............................FLFVSLIQFLIILGLVLFM---------VYGNVHVSTESNL............................ 60
6 -6.460PF07691.12; Q7SG54_NEUCR/449-597; PA14 domain  ali follow..  17  38....LAQTGPEWSAIATTYLTPKHSGKHTISYMSVGPGKLYINGKLSLDLWD--EAMFDGSVDYLVELEMVANRPVELRVEMTNELRPLSKQ...... 128
7 -6.330PF05363.12; ICP47_HHV2H/1-86; Herpesvirus US12 family  ali follow..  20  5.......................LKTTDMFLDSSRCTHRTY-------------GDVCAEIHKREREDREAARTAVTDPELPLLCPPDVRSDPASRNP 66
8 -6.200PF05297.11; LMP1_EBVB9/1-386; Herpesvirus latent membrane protein 1 (LMP1)  ali follow..  26  46.DWTGGALLVLYSFALMLIII--IFIFRRDLLCPLLCILLLMITLLLIALWNVLGIWIYLLEMLWRLGATIWQLLAFFLAFFLIIALYLQQNWWTL.. 167
9 -6.140PF15339.6; EQTN_HUMAN/53-250; Acrosome formation-associated factor  ali follow..  17  97.MDDKDQLFHPIPESDVNATQGENQPDLEDLKIKIMLGISLMTLLLFVVLLAFCSATLYKLRQYSVNPELATMSYF...................... 180
10 -6.030PF06736.11; J7LE88_NOCAA/5-90; Protein of unknown function (DUF1211 topsan)  ali follow..  13  6...SDGVLAIVITIMVLGLVQPEAATFESFFATTGLGLLSYLLSFVYVGIYWNNHHHMFQVADRVDGRVLWANLGLLFFISLL............... 85

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 5 5 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.