current user: public
If you have questions about the server, please let us know.

Query: gi|16082699|ref|NP_395145.1| hypothetical protein (YPCD1.08c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .
# Score Template Links and tools%idFirst MYKLSELADEDIYNIASYTIRHFGVTQAKLYHENLAKVFELLAKNPELGAECNWICSDIRRFQYKKHGIYYITLSNDILISRVLHQSIDIDVQDFPEHELast
1 -31.600PF05016.15; A0A023JAP0_SALTM/4-92; ParE toxin of type II toxin-antitoxin system, parDE  ali follow..  20  2..FWTMLASQDRKRIRKYIAEQ-NLMAAIELDERIGYSASSLAGQPYKGRNGRV-EGTRELVIHPHFVLVYEVDSQWVYILRVLHTAQK.......... 88
2 -13.600PF15781.5; B4SF36_PELPB/7-91; ParE-like toxin of type II bacterial toxin-antitoxin system  ali follow..  10  2..HQSTLFRRTYKRL------------HPNEKADVDDAIAEIIKDPTVGEPKKGDLAGVFRCNGQLTLLAYEYDAVSRLLLLLGSHE............ 78
3 -11.300PF06769.14; YOEB_ECOLI/5-84; YoeB-like toxin of bacterial type II toxin-antitoxin system  ali follow..  14  1...WSEESWDDYLYW---------QETDKRIVKKINELIKDTRRTPFEGKGKPELSGFWSRRITEEHRLVYAVTDDSLLIAAC................ 76
4 -6.210PF08438.10; U1I0Z5_ENDPU/226-345; GTPase of unknown function C-terminal  ali follow..  20  74..EMDEKLRTRIENLKDMVLYRFGSTGVVQVLGKAADLLGLVPVFP..................................................... 117
5 -6.030PF17829.1; C6CVT9_PAESJ/810-985; Gylcosyl hydrolase family 115 C-terminal domain  ali follow..  9  60.YDINLTSAGQF-PLEIYRIPTLNSKGKVRFAVSVDDESPIVVEVSNLFHMIEKHVVKMPAMTAGKHTIKLWMVDSFMMIDKMVLYTGPVIPTELGPDE 168
6 -5.850PF11944.8; Y2971_PHOPR/1-125; Protein of unknown function (DUF3461 topsan)  ali follow..  10  19.YSLRQEAANDILKVYFAKNKGELFAKSVKFKFPRQRKSVLVNSGSREYKEITEINRTLTHIIDELDIITKRKHTEVDIKKKILGDLRHLERVVSHK.. 114
7 -5.630PF08324.11; G0NNV7_CAEBE/596-852; PUL domain  ali follow..  7  1.IGLSGKGEKAVAKLKELNEKQDAFQLSTDQINCLEELFHLATTSNYSSDVAQSAFDTALQWPVEHLA---------LDFFRVALTHESLNSYFCTGER 91
8 -5.590PF11436.8; YQBG_BACSU/3-129; Protein of unknown function (DUF3199 topsan)  ali follow..  12  23..LLKQDILEATADIILKVGHDFSDAEYIPLPETVRLALLKLSQFYALINGDESIIKGYTTEKIGDYSYTLGDGSS....................... 96
9 -5.540PF14721.6; H2ZVB2_LATCH/477-606; Apoptosis-inducing factor, mitochondrion-associated, C-term  ali follow..  7  28.YEAIGIVDSSLPTLGVFAKAS-ATEESGTGIRSESETEAVASTVSKPASVPVALQAPQQGEDYGKGVVFYLRDQVVVGIV--IFNRMPIARKIIKD.. 130
10 -5.360PF01670.16; Q2UFR8_ASPOR/29-239; Glycosyl hydrolase family 12  ali follow..  14  157....INTFGGDIKKFFDYITSKHSFPASAQYLINMQFGTEPFTGG...................................................... 197
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.