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current user: public |
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Query: gi|16082699|ref|NP_395145.1| hypothetical protein (YPCD1.08c) [Yersinia pestis CO92], from Y.pestis |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . | |||||||
# | Score | Template | Links and tools | %id | First | MYKLSELADEDIYNIASYTIRHFGVTQAKLYHENLAKVFELLAKNPELGAECNWICSDIRRFQYKKHGIYYITLSNDILISRVLHQSIDIDVQDFPEHE | Last |
1 | -31.600 | PF05016.15; A0A023JAP0_SALTM/4-92; ParE toxin of type II toxin-antitoxin system, parDE | ali follow.. | 20 | 2 | ..FWTMLASQDRKRIRKYIAEQ-NLMAAIELDERIGYSASSLAGQPYKGRNGRV-EGTRELVIHPHFVLVYEVDSQWVYILRVLHTAQK.......... | 88 |
2 | -13.600 | PF15781.5; B4SF36_PELPB/7-91; ParE-like toxin of type II bacterial toxin-antitoxin system | ali follow.. | 10 | 2 | ..HQSTLFRRTYKRL------------HPNEKADVDDAIAEIIKDPTVGEPKKGDLAGVFRCNGQLTLLAYEYDAVSRLLLLLGSHE............ | 78 |
3 | -11.300 | PF06769.14; YOEB_ECOLI/5-84; YoeB-like toxin of bacterial type II toxin-antitoxin system | ali follow.. | 14 | 1 | ...WSEESWDDYLYW---------QETDKRIVKKINELIKDTRRTPFEGKGKPELSGFWSRRITEEHRLVYAVTDDSLLIAAC................ | 76 |
4 | -6.210 | PF08438.10; U1I0Z5_ENDPU/226-345; GTPase of unknown function C-terminal | ali follow.. | 20 | 74 | ..EMDEKLRTRIENLKDMVLYRFGSTGVVQVLGKAADLLGLVPVFP..................................................... | 117 |
5 | -6.030 | PF17829.1; C6CVT9_PAESJ/810-985; Gylcosyl hydrolase family 115 C-terminal domain | ali follow.. | 9 | 60 | .YDINLTSAGQF-PLEIYRIPTLNSKGKVRFAVSVDDESPIVVEVSNLFHMIEKHVVKMPAMTAGKHTIKLWMVDSFMMIDKMVLYTGPVIPTELGPDE | 168 |
6 | -5.850 | PF11944.8; Y2971_PHOPR/1-125; Protein of unknown function (DUF3461 topsan) | ali follow.. | 10 | 19 | .YSLRQEAANDILKVYFAKNKGELFAKSVKFKFPRQRKSVLVNSGSREYKEITEINRTLTHIIDELDIITKRKHTEVDIKKKILGDLRHLERVVSHK.. | 114 |
7 | -5.630 | PF08324.11; G0NNV7_CAEBE/596-852; PUL domain | ali follow.. | 7 | 1 | .IGLSGKGEKAVAKLKELNEKQDAFQLSTDQINCLEELFHLATTSNYSSDVAQSAFDTALQWPVEHLA---------LDFFRVALTHESLNSYFCTGER | 91 |
8 | -5.590 | PF11436.8; YQBG_BACSU/3-129; Protein of unknown function (DUF3199 topsan) | ali follow.. | 12 | 23 | ..LLKQDILEATADIILKVGHDFSDAEYIPLPETVRLALLKLSQFYALINGDESIIKGYTTEKIGDYSYTLGDGSS....................... | 96 |
9 | -5.540 | PF14721.6; H2ZVB2_LATCH/477-606; Apoptosis-inducing factor, mitochondrion-associated, C-term | ali follow.. | 7 | 28 | .YEAIGIVDSSLPTLGVFAKAS-ATEESGTGIRSESETEAVASTVSKPASVPVALQAPQQGEDYGKGVVFYLRDQVVVGIV--IFNRMPIARKIIKD.. | 130 |
10 | -5.360 | PF01670.16; Q2UFR8_ASPOR/29-239; Glycosyl hydrolase family 12 | ali follow.. | 14 | 157 | ....INTFGGDIKKFFDYITSKHSFPASAQYLINMQFGTEPFTGG...................................................... | 197 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10. |