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Query: gi|16082702|ref|NP_395148.1| plasmid-partitioning protein (YPCD1.12c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKRSPVLRNAPSINFDDAKPAISNAEPSVSAPAVSQLASRVSGMKGNTIVLPVCGRNVAFTLKVIAAPDVESKTIVFSGNERNQALLSETSLDDLIPSFLTSGQQIPAFAREHNGNIEVADGSRRRKAAILTGSDYKVLVGNLNDEQMLWLSQIANEYRPTSAYERGLRYAQRLISEFEGNISKLAEAEHLSRKIIQRCIKTAGLPLKTIQLFANPNELSARSGEALSKAYENNVDTLKRVTHKIMKQKQEGRQFTTEELIVLLMPERKQPENIHKKSFGKNIEAKYSKDNVSFYLKSVPESLVKQIEELLNTYAKEHSLLast
1 -27.600PF18090.1; D7U710_VITVI/142-216; Centromere-binding protein HTH domain  ali follow..  63  2.................................................................................................................................................................SAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFSHPGELSARSGDALQKAFTDKE..................................................................................... 75
2 -26.800PF02195.18; PARB_CHLTR/12-105; ParB-like nuclease domain  ali follow..  25  7...........................................................................IRVSPFQPRRTFLEEDLKELVLSIKTVGLIHPPVVREIRLYYELIAGERRWRALQLAGYTVPVVLKQLADDMAAEATLIEN.................................................................................................................................................................... 94
3 -25.300PF07506.11; Q9F5B9_AGRRH/157-326; RepB plasmid partitioning protein  ali follow..  11  1............................................................................................................................................................AREDLTFIERAAFALKLDEGGF--QRSLIQMALSVDRHEAQKLVTVARVPQWLIDSIGRAPKIGRPRWLELAELLKVPGAEKKARKATQDKSFSHKDSDNRFLVVLRASKIDDVTASSVARLVAKSATLAIGGKQCKIEMNDRDETFAKFVMEQLPALYAN... 166
4 -17.000PF08535.10; Q0VMS5_ALCBS/150-241; KorB domain  ali follow..  7  5....................................................................................................................................................................................KVTDIAKQLGKNKSWLARYRLLYQSNDALKTLYTSGLCRDVNALVELARAQDKHPADVSRFIQEALSGEATLSRSAVQGFLNSLKGAS.................................................... 92
5 -12.000PF08775.10; O68788_YERPE/194-316; ParB family  ali follow..  13  1....................................................................................................................................................................................................................FPVINDISLSDYQFLLKLAEESVTELMEKVQHRLKTMPDYPAIDKSKILAVIRSESKLLTALPTRNQFARKKTDPKKRLVVYEFSRISAEAQSEIDKAIKRILE.... 123
6 -8.840PF09904.9; A4XY65_PSEMY/5-95; Winged helix-turn helix  ali follow..  12  1..............................................................................................................................................................KTRTSFYRRLYLAWLIDSGQATSIPALMAATGMPRRTAQDTLAALEELDIDCRFEQGEGERNNAGHYLIHDWGPIDKRWIAAHLQQIKTT........................................................................ 90
7 -8.410PF07022.13; Q6K1G0_9CAUD/16-169; Bacteriophage CI repressor helix-turn-helix domain  ali follow..  7  5...........................................................................................................................................................................RLMSAYGVKMQKDLADLLGIAKHSVSGWVQRDAIPGNVIVRCCLDTGADIN.................................................................................................. 55
8 -8.000PF14072.6; C4LF29_TOLAT/12-346; DNA-sulfur modification-associated  ali follow..  14  12..........................................................PFYIATCPLRIVPKIFSYNEDDVPPQRTLNKTRIPDMVKYLLDNPKDYVILQIPMDAQILINDGQHRRKAIEEANLPVLFFVDEGLTRSQQMFADLNKYAVKPST-DESSELARYLAMEIEPFIGFTEMEKSNVSPKSNKLFTLSAIKQATKALLSK......................................................................................................... 214
9 -7.040PF08822.11; B0USA4_HISS2/1-164; Protein of unknown function (DUF1804 topsan)  ali follow..  10  5....................................................................................................................................................................EKVRALVRRYYVFDRFTLEQSAQKADVSFGTARRWKAQALNKGDDWDKARDVHIMAG---GEVNMISQGLLAGFILQYRTTMDELQQNTELSAKDKVMLLAALADSFTKMTAASKRILPEVSELAVAMRT-IHQHHSSLMEPFIDALNGFGQT... 160
10 -6.830PF08965.10; X2GUQ4_9GAMM/1-117; Domain of unknown function (DUF1870 topsan)  ali follow..  8  6..........................................................................................................................................................................LQAYRRFLMLKVSEASEYIGTDASTWHN----VPVPQYVVTAMQELKKLRTDKVNIIINSINDRVGS................................................................................... 74
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.