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Query: gi|16082705|ref|NP_395151.1| hypothetical protein (YPCD1.15c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVELCRLLKITRSVYSASLNFRVDVKRLQLRELHQQSRGAAGSRTLSLLMRQSGYNVVRWLARRLMRECGLASRQPGKPRYRGEREVSLASPDLLKRQFKPSEPNRVWSGYISYIKVNGGWCYLALVIDLYSRRIVGSAISSSPDAELVCRALast
1 -25.100PF13276.6; Q1WUI0_LACS1/209-271; HTH-like domain  ali follow..  21  1......................EVELKAVIKGLFDYYETEYGVRRLSSQIRDYYQAPNHKRIQRLMHEMGLKCTKYNR.......................................................................... 61
2 -11.300PF02914.15; TRA_HAEIN/267-485; Bacteriophage Mu transposase  ali follow..  11  1..................................................................................................VAMLQAMEWINGD-VWVRFPDG--KTWLWQDVRTRKVLAARTDKSENTDTIRLS 61
3 -9.410PF13610.6; Q6LW75_PHOPR/74-213; DDE domain  ali follow..  25  3...........................................................................................................WQLDETYVKVKGKWHYLYRAIN--QGETLDFYFSHKRNKEAAYQ. 45
4 -9.380PF08461.10; O27611_METTH/14-79; Ribonuclease R winged-helix domain  ali follow..  22  2............................EILRILAEHDDVLGAKIIASELRKKGYNLGERAVRYHMREKGFTERVGYAGRRITEK................................................................... 61
5 -8.490PF13551.6; C6C8A1_DICP7/11-74; Winged helix-turn helix  ali follow..  9  15VSKACKVMGVSRDTFYRYRELAEQGGVDALIN........................................................................................................................ 46
6 -8.460PF01498.18; A0P9K9_ONCMY/68-139; Transposase  ali follow..  15  16..........................................LDELQRSTAEVGDSVHRTTISGVLHKSGLYGRVARRKPFLKDIHKK................................................................ 61
7 -8.040PF03400.13; Q32H87_SHIDS/20-150; IS1 transposase  ali follow..  19  6......................................................................................................EMDEQW----GYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATL.... 47
8 -7.360PF01710.16; P74195_SYNY3/1-119; Transposase  ali follow..  9  21ITKASKIFKVGRATIYRWLGREELGATKVETRQRKINRKEL-NPDMLLKERAKKFGVTPASLCYQFKKMKVTKKKNSYFIKREMPKSE................................................................ 113
9 -7.350PF01316.21; ARGR_BACLD/1-70; Arginine repressor, DNA binding domain  ali follow..  20  2.....................NKGQRHIKIREI--TANEIETQDELVDILKKDGYNVTQATVSRDIKELHL................................................................................. 50
10 -7.280PF16677.5; Q2NSD2_SODGM/10-108; DNA-packaging protein gp3  ali follow..  11  31VAGLACYLGISRVTAQAYARENE-----EFSCTLEAIKTLQENRLINKGLTGDF---NATITKLMLANHGYSDKQE............................................................................ 98
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.