current user: public
If you have questions about the server, please let us know.

Query: gi|16082706|ref|NP_395152.1| hypothetical protein (YPCD1.16c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .
# Score Template Links and tools%idFirst MIMTQPKQTKRRFSPEFKLEAIEQVVKYQRSTIEVARALELDPSQLRKWIRQYKEEVSGMTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAAVLMSEFPIKSLRLast
1 -40.600PF01527.20; G3XCY0_PSEAE/3-78; Transposase  ali follow..  44  1.......KQRRTFSAEFKREAAALVLDQGYSHIDACRSLGVVDSALRRWVKQLQAERQGVTPKSKALTPEQQKIQELEARINR........................ 76
2 -24.600PF06627.11; S5YSW0_PARAH/4-89; Protein of unknown function (DUF1153 topsan)  ali follow..  12  17LTQADLPAPNTRWVASRKAVVAEAVEYGLLTRDEALSRYGLTEEELDCWVEAIRGHGREALKVTR.......................................... 81
3 -18.400PF13011.6; Q7VU25_BORPE/1-85; leucine-zipper of insertion element IS481  ali follow..  11  1....MNNHKHARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKWLARFRSEGLDGLLDRSSRPEQVEHFAQQRRQ........................... 85
4 -14.700PF01710.16; P74195_SYNY3/1-119; Transposase  ali follow..  4  2...........AYDLDLRIKVID-FIESGGGITKASKIFKVGRATIYRWLGREELG................................................... 45
5 -14.400PF07141.11; O80103_9CAUD/1-174; Putative bacteriophage terminase small subunit  ali follow..  13  1MQTQNGGRPTIMYEEPL-FSQIIDKIESGCNDREIYTSLHCSAKTFRKWRDDNIKAYDEAKGIARGNLLELAESALASKLTVRTLKETETIYDA............. 96
6 -14.100PF08822.11; B0USA4_HISS2/1-164; Protein of unknown function (DUF1804 topsan)  ali follow..  10  2...........AHDEKVRALVRRYYVFDRFTLEQSAQKADVSFGTARRWKAQALNKGDD................................................ 49
7 -13.700PF06056.12; Q6NFD1_CORDI/88-147; Putative ATPase subunit of terminase (gpP-like)  ali follow..  19  1...............EVKLRAVELFHN-GWRPADIAQECCLTHASVYAWAQRYRKEGQWGLMSKKE......................................... 51
8 -11.700PF09607.10; Q9XTN4_DROME/43-100; Brinker DNA-binding domain  ali follow..  27  2........SRRIFTPHFKLQVLESYRNDNDNQRATARKYNIHRRQIQKWLQC....................................................... 48
9 -11.000PF13022.6; C8VXN7_DESAS/1-124; Helix-turn-helix of insertion element transposase  ali follow..  15  2.......ARKYPLNLA-QKRAAEILAGHEMSLAQIAEHVGVSQRTLYRWKHD....................................................... 48
10 -10.800PF10668.9; A6LTX9_CLOB8/1-67; Phage terminase small subunit  ali follow..  13  3.........RQRSPDRDKAYEIFKEHGGNIQNRKIANILDIPEKTISGWKVK....................................................... 45
11 -10.700PF05344.11; Q63IL9_BURPS/242-305; Domain of Unknown Function (DUF746 topsan)  ali follow..  15  1.................RMRLFIRHLSLPLSVMQAADLVGTSHGIIHKWLRMFIE.................................................... 38
12 -10.400PF04218.13; B4NSC8_DROSI/7-59; CENP-B N-terminal DNA-binding domain  ali follow..  15  1......RKPRTSLTLEEKMEVIQSQEQNKLSVRDLAKRFNIGKTQAADILKH....................................................... 46
13 -10.300PF13551.6; C6C8A1_DICP7/11-74; Winged helix-turn helix  ali follow..  2  2.................KAGLLNLA-EELGNVSKACKVMGVSRDTFYRYRELAEQGGVDALINRSR......................................... 49
14 -9.890PF13518.6; B1VKL0_STRGG/33-84; Helix-turn-helix domain  ali follow..  7  1.................RRAQMVLLSAQGMPVAKIAEVSFTSDDRIRDVIHNFNADG.................................................. 40
15 -9.680PF13384.6; D3VHL9_XENNA/22-69; Homeodomain-like domain  ali follow..  20  7.................RIKAV-LLASEGWTTQRIAQALRIPESTVSRHLKDYFSEE.................................................. 45
16 -9.620PF02796.15; UVP1_ECOLX/144-189; Helix-turn-helix domain of resolvase  ali follow..  11  2........RKPSLSEDDINEMKILLADPEMTVGAVAKRFNVSRMTIYRYTTK....................................................... 45
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.