current user: public
If you have questions about the server, please let us know.

Query: gi|16082709|ref|NP_395155.1| Yop targeted effector (YPCD1.20) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320
# Score Template Links and tools%idFirst MNSIHGHYHIQLSNYSAGENLQSATLTEGVIGAHRVKVETALSHSNLQKKLSATIKHNQSGRSMLDRKLTSDGKANQRSSFTFSMIMYRMIHFVLSTRVPAVRESVANYGGNINFKFAQTKGAFLHKIIKHSDTASGVCEALCAHWIRSHAQGQSLFDQLYVGGRKGKFQIDTLYSIKQLQIDGCKADVDQDEVTLDWFKKNGISERMIERHCLLRPVDVTGTTESEGLDQLLNAILDTHGIGYGYKKIHLSGQMSAHAIAAYVNEKSGVTFFDPNFGEFHFSDKEKFRKWFTNSFWGNSMYHYPLGVGQRFRVLTFDSKEVLast
1 -75.000PF03543.14; YOPT_YERPE/103-320; Yersinia/Haemophilus virulence surface antigen  ali follow..  100  1......................................................................................................RESVANYGGNINFKFAQTKGAFLHKIIKHSDTASGVCEALCAHWIRSHAQGQSLFDQLYVGGRKGKFQIDTLYSIKQLQIDGCKADVDQDEVTLDWFKKNGISERMIERHCLLRPVDVTGTTESEGLDQLLNAILDTHGIGYGYKKIHLSGQMSAHAIAAYVNEKSGVTFFDPNFGEFHFSDKEKFRKWFTNSFWGNSMYHYPLGVGQRFRVLTFDSK.. 218
2 -14.800PF15644.6; R4M122_9ACTN/808-932; Papain fold toxin 1, glutamine deamidase  ali follow..  15  2..........................................................................................................................................CQDCVLSFFDTYLHGRP---------------RVSAPRTFDAYSDGDPQRPLHGEAIGPERVERTTGGRLQSLCKPDPDPVLARRNAARALSDVSTQLINGGHGSFAFLMSA--EGGSAHAWAA-VNHNGEILFVDPQSGR........................................... 125
3 -14.500PF07906.13; Q327D9_SHIDS/1-264; ShET2 enterotoxin, N-terminal region  ali follow..  15  47.........................................................................................................................................VCRHLASYWIAQFNKSSG------------------------------HVDYHHFAFPDEIKNYVSVSEEEKAINVPGIIYFVENGSWGDIIYHIFNEMIFHAEKNRALEI-----STSNHNMALGLKIKETIQLYDPN--EFNNFNLDKIKKLVDNFLDEKH...................... 188
4 -13.200PF04843.12; LTP_HHV8P/13-186; Herpesvirus tegument protein, N-terminal conserved region  ali follow..  10  1...................................................................................................................STHQAN-------CIFGEHAGSQCLSNCVMYLASSYYNSETPLVDRASLDDVLEQGMRLDLLLRKSGMLGFRQYAQLHHIPGFLRTDDWATKIFQSPEFYGLIGQDAAIREPFIESLRSVLSRNYAGTVQYLIIIC----QSKAGAIVVK-DKTYYMFDPH-SVIKTNDVGVLLPYI.............................. 174
5 -13.000PF12385.8; E1VLS9_9GAMM/65-219; Papain-like cysteine protease AvrRpt2  ali follow..  7  1.....................................................................................................................TSIRYDIPGEFQVLAQPSSMACWATVFTMLKSWRSQRGMTIEQATASVGQRWLDLYRAD------------------------------TGLSGDDKVNFISTAGLVAEPPQSYSIQGWETLLRNYGPIWVTT-GKAWAIHARIIT-PEGTCFKIVDPAGGRRYEESIAVFIPKYE............................. 155
6 -12.000PF11814.8; G4T3E3_META2/170-375; Peptidase_C39 like family  ali follow..  10  4....................................................................................................................YRQTTDFS--------------CGPSGLLMAMAGLKPDIELSQAHELQIWRESTLAAWRRGFAVDVYLSQQDVLFIDSVRNPEKREVISLVQEDFLRQLKQTDVRMHFDKITLEALTGHLDAGHIPLILISTYRINRNKAPHWVVVTAHDPHFIYLHDPDVDTEQHASEAD................................... 177
7 -11.200PF05543.13; SSPP_STAA8/215-388; Staphopain peptidase C47  ali follow..  10  16..................................................................................................................................ETQGNNGWCAGYTMSELLNATYNTNKYHA------------------------EAVMRFLHPNLQGQRFQFTGLTPREMIYFGQTQGRSPQLLNRMTTYNEVDNLTKNNK------IAVLGSRVEAGHAMAVV-NGQEVIIIWNPWDNGFMTQDAKNNVIPVSN............................ 161
8 -9.010PF13529.6; A8AW79_STRGC/87-233; Peptidase_C39 like family  ali follow..  9  3...............................................................................................................................VPMQVQRAWNTCAPTTVSMMLACRGIDISQEQLAEEMGTDNQFGTHNVNSIQVLNQHLFGYPEPTDGQAGYRLET------------VKSSSSNSIDMRLFKERLKKNIDAGY---TFDNSKMYPGRSGEHNVIGIYELNSDVYYIDP............................................... 146
9 -8.790PF18022.1; A0A0C2WFZ8_9HOMO/318-415; Ricin-type beta-trefoil lectin C-terminal domain  ali follow..  34  72.............................................................................................................................................................................................................................................................NGEKHAYNWSLNQDTAVTFFEPQNGL........................................... 98
10 -8.770PF18021.1; A0A0C3Q319_9HOMO/149-241; Agglutinin C-terminal  ali follow..  18  60.......................................................................................................................................................................................................................................................VVYGNARTGPKAYNWYLSSGHDLMFFDAQTGQ........................................... 92
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.