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Query: gi|16082711|ref|NP_395157.1| hypothetical protein (YPCD1.22c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQHPVSFPSFSFHDNSIFCNKPIVGTMNINADHEKNLKVSIIYKIQLIGGITEILNGGVINWGIFNLVGYFKSSISLIKIIIIDNTNLVMLYVKIWINNENFLIYSELKTNELLYKPYLLNLIDIIVTMLast
1 -7.260PF09871.9; F7XP05_METZD/16-103; Uncharacterized protein conserved in archaea (DUF2098 topsan)  ali follow..  18  1.........................................................................PIKVGSTVRYINTGTVGNITD--IKQDSEGAWALLDDTDLYYRVDFLEVTA..... 49
2 -7.000PF09591.10; Y607_ENCCU/36-243; Protein of unknown function (DUF2463 topsan)  ali follow..  28  59.....................................................................YYTLNLLLLAFTIISILSIIAFTLDEWENNDDSLLYSITLPSFFIPLTYLLSLIDILILL 137
3 -6.830PF11200.8; A7AQJ9_BABBO/2-370; Protein of unknown function (DUF2981 topsan)  ali follow..  13  6........................................YIAIQQFLLGISLYSVIHYLHPSLTQLAWLLFGTNAISAVL---NIVMECVYLVFYAISLFLIFLTVLDMAELVH.............. 85
4 -6.800PF08994.10; VG59_BPT4/113-216; T4 gene Gp59 loader of gp41 DNA helicase C-term  ali follow..  14  36..................................................................FKLLQSNIISFETFILLDS---FLNIIDKHDEQTDNLVWNNYSIKLKAYRKIL.......... 85
5 -6.500PF06590.11; Q9EUG4_ECOLX/1-129; PerB protein  ali follow..  23  1..........................MKNNLREEKEVVIDGCINVLSLPSEWKAITPKKNNVTSEIIVFFIPPKASYHIILKYDNTKHCELFFSDHITGEQDVIYSQALVDVLNKKSYASNVIKFLITM 115
6 -6.300PF17872.1; Q6FKI6_CANGA/756-852; AAA lid domain  ali follow..  14  5..............................................................................................RGLNNSSFYVDPKTGNAKLAEATSNENVPEGMLK. 38
7 -5.910PF07388.11; A1KR99_NEIMF/1-492; Alpha-2,8-polysialyltransferase (POLYST)  ali follow..  11  403......................LLKSAEYAYKNKNFYQAIFYWQLASNNDLSVLGYKSLWYYNALNKVKQ-NYKMKYLEINYIER-------ISLYFNDKDKMIWQNIKND--FFKYSLCN........ 491
8 -5.740PF09022.10; Q2G2R7_STAA8/1-105; Staphostatin A  ali follow..  23  61..............................................................................KQLTLYNKNNSSIVIEIFIPNDNKILLTIMNTEALGTSPRMT......... 102
9 -5.670PF15782.5; H2M7V5_ORYLA/1-1933; Gene regulated by oestrogen in breast cancer  ali follow..  16 1818.ANPVSVDCYLNLGPEVTVCFMSSRPHSVNISTTGL----------LFSGLLLCFADAFVTSGFLKKFTFLKGAT--LCVISADRSSLRQTVGRLELEEERFRLSDEFQTNAKEDRPFFLT........ 1929
10 -5.640PF17819.1; F1MMA3_BOVIN/240-382; Family of unknown function (DUF5582 topsan)  ali follow..  17  102...................................................................................DPYQVSLRYME---KHHILQIFQQITENLVYEKPFMLCQV...... 143
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.