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current user: public |
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| Query: gi|16082712|ref|NP_395158.1| hypothetical protein (YPCD1.23) [Yersinia pestis CO92], from Y.pestis |
| . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . | |||||||
| # | Score | Template | Links and tools | %id | First | MSKITTLIICSKPAEIAVGHFITMSIKAILLYSYQEYGQHTDVFIQVKFNYGMIEYKFYVNKVKFDDTPDRKLKTTIAHSSQLMGHNLTYEDYAMKKRLVIATALCAAFYAGMKVEHFLTVDACLDAGGAMQNDIFCER | Last |
| 1 | -8.200 | PF10682.9; UL40_HCMVM/7-220; Glycoprotein of human cytomegalovirus HHV-5 | ali follow.. | 21 | 82 | .SSNTVVAFSHHPADIEVGNNTRRHVDGISCQDHFR-AQHQDCPAQTVHVRGVNESAFGLTHLQ---NEHSQLSERVAYHLKLRPATFGLETWAMYTVGILALGSFSSFYSQI.......................... | 197 |
| 2 | -5.990 | PF17538.2; W1P8B9_AMBTC/207-376; DNA Binding Domain (C-terminal) Leafy/Floricaula | ali follow.. | 22 | 15 | .......FIVTEPGEVARGK------KNGLDYLFHLYDECRNFLIQVQFRHAKRAGASHINKPKM-HCLDEEASNALRRAFKERGENVGAWRQACYHPLVAMSRHHHAW.............................. | 136 |
| 3 | -5.970 | PF11321.8; C5X9Z4_SORBI/68-189; Protein of unknown function (DUF3123 topsan) | ali follow.. | 13 | 1 | ......VRVRTRVGTVCTGQHLVLWLRAVVESAADE--DDADGCLRVAYDY........................................................................................ | 43 |
| 4 | -5.960 | PF00849.22; A8BNG7_GIAIC/150-391; RNA pseudouridylate synthase | ali follow.. | 12 | 2 | ......HVFCEKPASMPVGKYCYHSVNELVASPDTKLTTKKSLRACNRID-GLI----------------ADSSKEAEQKRNEIVERGNVKVYL............................................. | 81 |
| 5 | -5.890 | PF00685.27; SOT11_ARATH/88-347; Sulfotransferase domain | ali follow.. | 13 | 88 | .KACKTVYVCRGIKDTFVSGWHYRNMLHRTKMDQATFELMFDAYCRGVLLYGSLEAKENVLFMKYEEII-EEPRVQVKRLAEFLECPFTKEE............................................... | 189 |
| 6 | -5.860 | PF02408.20; Q9XUH2_CAEEL/18-132; CUB-like domain | ali follow.. | 11 | 39 | .........CSWTVTIPQGYYAKLIISGET--------LDLDSYFQTIDSAGNLARTTHEGLEPYYFVSPKFQLVVSNDSPATFAFKIIWLPL.............................................. | 114 |
| 7 | -5.730 | PF06256.11; Q8B9K9_NPVR1/6-178; Nucleopolyhedrovirus LEF-12 protein | ali follow.. | 15 | 41 | VSDDTAAWLCGR---LPTCNFVSFRVHI------DQFEHPNPALEYFKFEESLAQRQHYMNYTLFKNVVALKL-YTRTLQANMYADGLPY................................................. | 128 |
| 8 | -5.640 | PF12039.8; Q66225_9VIRU/1294-1746; Protein of unknown function (DUF3525 topsan) | ali follow.. | 19 | 9 | .GKFTFIY--------PFGHWCLRDTNSMIVYEGRFVNQDADLF-PLKAGHTVHLVPFHVQKL---DSMDDKAQPYSAS------HNCT----VILESIMYRSVIGFLFAYGISWAVYMV................... | 118 |
| 9 | -5.550 | PF04847.12; RCAN1_HUMAN/75-246; Calcipressin | ali follow.. | 11 | 4 | ....................FVDGLCRAKFESLFRTYDKDITFQYFKSFKRVR---------INFSNPFSAADARLQLHKTEFLGKEMK.................................................. | 63 |
| 10 | -5.410 | PF12005.8; D2SFK7_GEOOG/5-115; Protein of unknown function (DUF3499 topsan) | ali follow.. | 16 | 1 | .SRRCSRSGCAQPAAATLTYVYAESTAVV--HSYDLCEFHAG--LTVPRGWEVVRHE--ADAVREAARPEPPRNPADDGSGTRRGHLRVLPD............................................... | 111 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96. |