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Query: gi|16082715|ref|NP_395161.1| secreted effector protein (YPCD1.26c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFELast
1 -20.400PF14580.6; H3BFR2_LATCH/1-175; Leucine-rich repeat  ali follow..  17  2.......................................................................................................................................VKLSAELIEQAAQYTNPVRDRELDLRGYKIPVIENLLDQFDTIDFSDNEIRKLDGFPLLKRLKTLLMNNNRICRIGEGLPNLRELILTSNSIQELGDLDPLKSLTFLSILRNPVTNKKHKVPQIRVLD.................................................................................................................................................. 146
2 -11.300PF13855.6; C3Y9A4_BRAFL/119-179; Leucine rich repeat  ali follow..  23  1..................................................................................................................................PRLYDLSLDSNRLTHVKQFTGLENLLSLTLSNNRIEKIEA-LDRLQHLYLENNLL................................................................................................................................................................................................................................ 61
3 -9.390PF12799.7; A4HHM1_LEIBR/66-108; Leucine Rich repeats (2 copies)  ali follow..  21  1..................................................................................................................................KWLKYLNLAVNNITVIDGLQGCEALERLDLTLNFIAEPTSV.............................................................................................................................................................................................................................................. 41
4 -7.780PF11047.8; SOPD2_SALTY/1-319; Salmonella outer protein D  ali follow..  12  222.............................................................................................................................................................................................SFNITTQFFKIGYWELEGEVLFDMV-SYLLQAYKPSLSSDLIETNTMLFSDVLNKDYDDYQNNKREIDALRRIYRSHNNTLFISEKSSCRNML............................................................................................................................... 318
5 -7.720PF13599.6; D6D2K3_9BACE/86-166; Pentapeptide repeats (9 copies)  ali follow..  10  6.................................................................................................................................................................................................................................................................KLLGTNLSETTMNHVLLHDCNAGYINLAMSKMNQVRFAHSQLRNGSLNDCRFSSVAFESCDLVEADFSHAPLRGI............................................................................. 80
6 -6.760PF08429.11; C0NTM6_AJECG/929-1274; PLU-1-like protein  ali follow..  11  10................................................................LADEPKPSLKALHALLSEGEKIPYFLPGLQDLTSFVQRCDKWVDEANNYITRKQQNRRKNEKAWRRGNSAKAAQLEERDRELRKVEKIYALDNLSFDCPQIVSLREKVQEIQKFQSDAQAILCNPHISSTQEVEELNVDIPEVDKLEKALRQMKWNDQARRKREQLQTLDECREF----IEQGEQLGLSETNEHLLYFKEMLRLAETWESKAKEL--MSVEVVHYQQLEALSSQAAKLPVSPETLSAVDAILTKQREAQRQISGFYDSSRNPDFRKR------HYKDVRDLMESLTELNSKPNGTIDLEKEQKRHEDWMRKGKKL.................... 334
7 -6.110PF10084.9; C4KCQ7_THASP/3-101; Uncharacterized protein conserved in bacteria (DUF2322 topsan)  ali follow..  13  2...........................................................................................................................................ADNLKTLPGVSHLAALNLIDAADAVVATIENKPGQAGSLAVYNHLAQLYGAISPEAAKKGLELYAEHTEDARANPGKHPNIDR........................................................................................................................................................................................... 84
8 -5.070PF16472.5; R5URH3_9FIRM/40-322; Domain of unknown function (DUF5050 topsan)  ali follow..  9  29...........RLYSMDTNGNHLKKLSYDRVMYINADDHYVYYVRNNEN---------NGTGFDFFSYARNSLCRIDQNGENTKILDK--DPCLYASLVGNYIYYLHYDDKDATTLYKIGIDGEGRKKVYSPYIFTCSTLGQYIYTSGTESDGAIYQLDTASDSLSKVYE--CNSFKPIVSDDNV--YMDVDQNNALVHTNMKSGHPVTLTK--DSLDLYNVYGSSIFYQRYSEDNPALCMIKNDGSGYQELAQG-SYIYFTDFKTKEMFCTP........................................................................................................................................ 282
9 -4.330PF03999.12; B0WUV8_CULQU/23-592; Microtubule associated protein (MAP65/ASE1 family)  ali follow..  8  44.............RLLKEDTVDGVDEQPGMPLHLVQITLDRSLEKMREKLKHRHELIEEYLCEELGEDLRNLPKDPLPSEATMCEFRTYLDNLRA---KLQRFDDIATMRRDIKIMHLGIVPQTEREQDLTEALNFPPTRVNLHDLRCLHE----QVGAWYDDLKENIDRARAKLANL-----NVLAVSPSHVKRYEKYNEYTQATYDKLFAELDRCETLRRENIQNFIEQTRVEIVQWDKCLKSNEERSRFSTFKSE-DLLTLHEMELNDLKDFYRTNETI----ALVEQRREMWDKMILLEQKSSDPSRYNNRGGKLLEEEKERKRISQLPKIETRLLEACKRYEE............................................................. 378
10 -4.040PF04826.13; ARMX3_MOUSE/110-363; Armadillo-like  ali follow..  13  1....................................................................................................................................................................................SPNSDDTVLSPQELQKVLCLVEMSEKPYILEAALIALGNNAAYAFNRDIIRDLGGLPIVAKI-LNTRDPIVKEKALIVLNNLSVNAENQRRLKVYMNQVCDDTVTSRLNSSVQAGLRLLTNMTVTNEYQHILANSISDFFRL-FSAGNEETKLQVLKLLLNLAENPAMTREL-QVPSSLGSLFNKKEYKEVILKLLIIFENI........................... 203
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.