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Query: gi|16082716|ref|NP_395162.1| secreted effector protein (YPCD1.28c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTINIKTDSPIITTGSQLDAITTETVKQSGEIKKTEDTRHEAQAIKSSEASLSRSQVPELIKPSQGINVALLSKSQGDLNGTLSILLLLLELARKAREMGLQQRDIENKATITAQKEQVAEMVSGAKLMIAMAVVSGIMAATSTVASAFSIAKEVKIVKQEQILNSNIAGREQLIDTKMQQMSNIGDKAVSREDIGRIWKPEQVADQNKLALLDKEFRMTDSKANAFNAATQPLGQMANSAIQVHQGYSQAEVKEKEVNASIAANEKQKAEEAMNYNDNFMKDVLRLIEQYVSSHTHAMKAAFGVVLast
1 -98.300PF05844.12; O68699_YERPE/13-306; YopD protein  ali follow..  100  1............TTGSQLDAITTETVKQSGEIKKTEDTRHEAQAIKSSEASLSRSQVPELIKPSQGINVALLSKSQGDLNGTLSILLLLLELARKAREMGLQQRDIENKATITAQKEQVAEMVSGAKLMIAMAVVSGIMAATSTVASAFSIAKEVKIVKQEQILNSNIAGREQLIDTKMQQMSNIGDKAVSREDIGRIWKPEQVADQNKLALLDKEFRMTDSKANAFNAATQPLGQMANSAIQVHQGYSQAEVKEKEVNASIAANEKQKAEEAMNYNDNFMKDVLRLIEQYVSSHTHAMKAAFGVV 294
2 -25.000PF09599.10; Q7NUS9_CHRVO/2-343; Salmonella-Shigella invasin protein C (IpaC_SipC)  ali follow..  13  62............................................................................GLSTRMAALLSQAIVLMSALRTADNALSTKLSLVSFDATKATAASMVREGIANLSSSIVQSVGQVAITGVGAKKSLNGLNAERGALKNNAPKLGKGDKISLQSSNSKLARQHEAALGSSTEDLTAKSQAEQLAMDDTKLKAQAKQTTGKAIMDSSAAAGNIAGGSGRYAATLEQSEQQISQASSRVASTASEETRESSRKADSIIQELLRTLEGISQSKS.......... 342
3 -18.200PF05802.11; C5B9R0_EDWI9/34-192; Enterobacterial EspB protein  ali follow..  14  1................................................................................QLNELMVQLGELFGKLRDVLRQYQQAQQSNAFKMQKTAFETRVDSIDKDFQAKQAQAVAQIVGGIAQTVGGGFG---------------------------------------------------------------EHGHTISTGLNNMTQGIVGVGYANDLTRQS--QEEQALSDYQHGMADQLLKRAEETKEKALKVSGDLREILATLTQAHEHLSSSV.... 157
4 -8.490PF04888.12; C5B9R1_EDWI9/106-478; Secretion system effector C (SseC) like family  ali follow..  10  11............................................................................KALGDNANLKALALKIREQGAENLRLRQNEDLRKQVDKAVEDQAKAQKAGIFSAIVDWIVSIAEVVSGIGKLLIGDFAGGAMDVKAACETLALIDKDHADKYQAIADVAGKVQLAFELAGMVVDLVSVGRGVMAGKSIAKAAETAMEGAAGEALHNAVTEGSEEAIKAAAKEIGKEVAGQVSEEVIRNLAEQSGRFLGEAIEKMVTQAVETANALKSGGDISLEALTKQV 260
5 -7.750PF17098.5; T1JJM3_STRMM/71-267; WTAP/Mum2p family  ali follow..  7  3..............................................................................................TRRENLLVVRLAAKEQEMQEYASQIQELKQSGSSQLRSTLLDPAVNL--------------------ENMKKELIATKAKLEETQNELSAWKFTPDRWRHLLNFAHSLCFPVERVSQASEAGDIVHVPARHYTARLMAKCRLLYQENEELGKMISSGRMAKLEGDLALQKNFSEEMKKSQTELDDFLLELDEDVEGMQST............ 196
6 -7.380PF09325.10; A8WVN0_CAEBR/231-466; Vps5 C terminal like  ali follow..  7  1....................................................................................VKKIFKNFQVVFSKMAFHME--EGDRWFEQVQSQIDELDERKLYTVTESLVASRREMATSGELLGKALSMLAACEESTSLSRALSALTDVTESVSNAWGKQAEIDNAKIMLISALKDVFGERVRAWQQWQDAQQTLSRKRDQKTKIDLAAGGRNEKSDQLKAEIEETVLRIDQLEQHFGELSKAIREEVARFDTDRKTDMKKILIDYMESMIHTHTEMLQL. 229
7 -6.980PF14007.6; D6XSR8_BACIE/4-90; YtpI-like protein  ali follow..  14  6.................................................................................GFLMIFLYFKMRQYRSTYEAVKHSYASKASMAGLFMISFAINSYVQLQTTVAAVILLLFLAMGGANIFLGYKNFK...................................................................................................................................................... 81
8 -6.640PF10675.9; Q07W41_SHEFN/13-146; Protein of unknown function (DUF2489 topsan)  ali follow..  9  1.................................................................................IVALATYAAHLLLTLKRKTQANQQALSERK-AKADERRQQILTD-IRYIAAAMLEDRCELSEGVMRI.............................................................................................................................................................. 65
9 -6.440PF05837.12; C1G1C0_PARBD/130-246; Centromere protein H (CENP-H)  ali follow..  13  45...................................................................................QMVQTLLGLTSAEKTWREEITDPKLRAQLETVEKECKAEQA--NWVTIKRIVSAAI-VASGI................................................................................................................................................................. 103
10 -5.910PF01385.19; P73816_SYNY3/165-279; Probable transposase  ali follow..  7  48..........................................................................................RLRKCQRNLARKQKGSKARLRVAKVHAKVKDTRTDFLHKLSTRLIRENQTVILEDLNTAGMMKN........................................................................................................................................................ 115
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 5 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.