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Query: gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSALITHDRSTPVTGSLLPYVETPAPAPLQTQQVAGELKDKNGGVSSQGVQLPAPLAVVASQVTEGQQQEVTKLLESVTRGAAGSQLISNYVSVLTKFTLASPDTFEIELGKLVSNLEEVRKDIKIADIQRLHEQNMKKIEENQEKIKETEENAKQVKKSGIASKIFGWLSAIASVIVGAIMVASGVGAVAGAMMVASGVIGMANMAVKQAAEDGLISQEAMKILGPILTAIEVALTVVSTVMTFGGSALKCLANIGAKLGANTASLVAKGAEFSAKVAQISTGISNTVGSAVTKLGGSFAGLTMSHAIRTGSQATQVAVGVGSGITQTINNKKQADLQHNNADLALNKADMAALQSIIDRLKEELSHLSESHQQVMELIFQMINAKGDMLHNLAGRPHTVLast
1 -13.500PF05844.12; O68699_YERPE/13-306; YopD protein  ali follow..  71...........................................................................................................LSILLLLLELARKAREMGLQQRDIENKATITAQKEQVAEMVSGAK-----------------LMIAMAVVSGIMAATSTVASAFSIAK--------------------------------------------------EVKIVKQEQILNSNIAGREQLIDTKMQQMSNIGDKAVSREDIGRIWKPEQVADQNKLALLDKEFRMTDSKANAFNAATQPLGQMANSAIQVHQGYSQAEVKEKEVNASIAANEKQKAEEAMNYNDNFMKDVLRLIEQYVSSHTHAMKAAFG..... 292
2 -10.300PF04888.12; C5B9R1_EDWI9/106-478; Secretion system effector C (SseC) like family  ali follow..  15  3...........................................................................................................LAASLLGVKALGDNANLKALALKIREQGAERQNEDLRKQVDKAVEDQAKAQKAGIFSAIVDWIVSIAEVVSGIGKLLIGDFA-GGAMDVAAGCSGLVKAACETLALIDKDHADKYQAIADVAGKVQLAFELAGMVVDLVSVGRGVMAGAAKEIGKEVAGQVSEIEKMVTQAVETAVKNALKQRAVIKAIIGACITSVANNAKSTTRATLQGTNGIYQGVITKERAELQKVIQQLMNESSFLQFMLDEFEKVKKNAQENISNLMDGAGKALSSAADAQQKSGAMLSSIAAN.... 373
3 -8.450PF13988.6; D8MQN7_ERWBE/128-293; Protein of unknown function (DUF4225 topsan)  ali follow..  19  1.................................................................................................................................QNLKQEHEYLTIQDRMLRSGHAVVSASVQFYHEHEKIIGYIIDGIGVVVGGLQMVAGIGVVAGSSLVLSGAGSTAEKLLGRANPTNFMREDAAEFMGFDKRLGFLAYQAVDFTTSYYGVLKLSLKPEAWRL............................................................................................................................................. 150
4 -6.810PF11166.8; Q2FYD6_STAA8/2-99; Protein of unknown function (DUF2951 topsan)  ali follow..  20  29..........................................................................................................RIEDSLRTQEKIYDKLDRNFEELRRDKEEDEKNKEKNAKNIRD------------IKMWILGLIGTISTFVIALLKTIFGI...................................................................................................................................................................................................................... 98
5 -6.740PF05461.11; M3YMB0_MUSPF/26-333; Apolipoprotein L  ali follow..  12  6............................................................................................................ELDTLLSDQESWERFVAEATLSREEAEALREVLNELQRTMDMEADEQEARESELADEV----CTIANVVANSTGVVSGLLSILG-LGLAPVTAGAS-----------------------ALLATGMGLGVAATVTQVSTSLVEDSSAQASHLTSTDFDKGEVIAKVLHDRIPQIYSLTGTCFRALQNIANNVRAINLAKVKPRLVVNARRLMTSQRISVRGGRQVQKAFGGTALAMTKGARIMGAVTAGLMDESAEDIRQQARELESKLKKLSEIYEI............... 307
6 -6.160PF10177.9; W5KY66_ASTMX/13-159; Uncharacterised conserved protein (DUF2371 topsan)  ali follow..  1....................................................................................................................................RQDSLRTKNRAENKRRRKARKKRKNDIVVVKGKLNLCSVSGMAAAFGVLVLMVGIAMAVLGYWPRENLAHTVSLQRVNDATSNYQYSDNLKVFGPLVMGIGIFLFICANAVLH............................................................................................................................................................ 134
7 -6.070PF09599.10; Q7NUS9_CHRVO/2-343; Salmonella-Shigella invasin protein C (IpaC_SipC)  ali follow..  72...........................................................................................................SQAIVLMSALRTADNAL---------STKLSLVSFDATK--ATAASMVREGIANLSSSIVQSVGQVAITGVGAKKSLNGLNAERGA--LKNNAPKLGKLGDEGRNVQATLSRQNTVKLAADADGLKQVGLKPQNGAA--SAQPNAAASVADGMAGDKISLQSSNSKLARQHEAALGSSTEDLTAKSQA---QLAMDDTKLKAQAKQTTGKAIMDSSAAAGNIAGGSGRYAATLEQSEQQISQASSRVASTASEETRESSRKADSIIQELLRTLEGISQSK.............. 341
8 -5.900PF12304.8; R4GCX9_ANOCA/17-198; Beta-casein like protein  ali follow..  19  2..............................................................................................................................................................KTGLILIVIGHLNFITGALVGTVLVSNIVTVVSAILTISCGIAAIVRYISRKPLAWAVFSLSVGSTLLSLFCSAGLAVAIVVTFANQGRTLLE...................................................................................................................................................... 112
9 -5.840PF02659.15; MNTP_SHIDS/30-182; Putative manganese efflux pump  ali follow..  16  5..........................................................................................................................................................SEALRTGLIFGAVETLTPLIGWGMGMLAIAFVLLIFLGGRMIIE--------GFRGADDEDEEPRRRHGFWLLVTTAIATSLDAMAVGVGLAGCATLIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGV.................................................................................................................... 150
10 -5.730PF05957.13; Q9HZG8_PSEAE/12-109; Bacterial protein of unknown function (DUF883 topsan)  ali follow..  14  1.......................................................................................................DELLAEFQALVADTEKLLQSTA-DQAEEIRGKIHDSLKRARDTLRDTKDSLKDNVRERSQAAVDATEVYVGEHPWQSIGIAAGVGFLLGLLV.............................................................................................................................................................................................................. 95

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.