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Query: gi|40548797|ref|NP_954989.1| hypothetical protein (YPCD1.14n) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .
# Score Template Links and tools%idFirst MMQSMSRRGNCLDNSPMERVFRSLKSEWLLVGGYMDVHHAVRDIGEWIQSYYNTPPSAQWWITALLast
1 -24.900PF13333.6; Q5F880_NEIG1/215-270; Integrase core domain  ali follow..  27  1.................ESFFGTLKSECFHTCKYDSVTESEAALHEYIR-YYNNDRIKLKGLSPV 49
2 -22.600PF13683.6; Q7DB06_CAUVC/199-265; Integrase core domain  ali follow..  18  3VAWHYIAPGKPTQNGFVESFNGRMRDELLNETLFFGLDHARQKLAAWAED-YNTRRPHSGYQTP. 67
3 -6.820PF15606.6; RHSA_ECOLI/1298-1372; Bacterial toxin 34  ali follow..  19  10....IASRGNVADTGITDRVNDIINDRFWSDGKKPDRCDVLQELID................... 51
4 -5.780PF02320.16; B6QQG9_TALMQ/391-460; Ubiquinol-cytochrome C reductase hinge protein  ali follow..  18  55.........HCATQCAAPKLWKSLR........................................ 70
5 -5.480PF04745.12; VTF3S_VAR67/1-288; VITF-3 subunit protein  ali follow..  12  98ALLTIASKGCKLTETMIEAFFPELYNEHSKKFKFNSQVSIIQEKLGYQSGNYHVYDFEPYYST.. 160
6 -5.430PF15333.6; F6RBU1_HORSE/6-220; TATA box-binding protein-associated factor 1D  ali follow..  11  116......RKILTFEQAVARGFFNKLKYEYHLKESLKQMNVGEDLEKDDLDSRRYKYLDDDGSLSPI 177
7 -5.260PF03051.15; PEPC_LACLA/3-433; Peptidase C1-like family  ali follow..  9  57.VTNQKQSGRCWMFAAL----NTFRHKFINEFKTEDFEFSQAYTFFW.................. 98
8 -5.130PF02890.14; O50716_BORBU/46-185; Borrelia family of unknown function DUF226 topsan  ali follow..  10  80......KKGSVF--CYLRSLARLIKKEKINKKYFQTFIDMLNRLEKKVYEFYCKELPDGGIIN.. 134
9 -4.990PF14043.6; Q81YW0_BACAN/3-75; WVELL protein  ali follow..  14  26................VELLWEDFQTTYAKSGRYQGEEMTEQVVRSWINNH.............. 60
10 -4.970PF17896.1; R1A_IBVB/14-371; Replicase polyprotein 1a N-terminal domain  ali follow..  15  227........GTCL-NGAVAKFFEELPNGFMGSKIFTTLAFFKEAAVRVVENIPNAPRGTKGF.... 281
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.