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Query: gi|16082703|ref|NP_395149.1| plasmid-partitioning protein SopA (YPCD1.13c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDLKSTLDRCIERGQFMTQEIAKSQFGNDSPAARTITRRWRITEAAELVGVTPQTIRNYEDSGKLPPPDTAMIGRVEQRTGYSIQQINDMRDVFKTRLSKPKGENPVVLAIAAHKGGAYKTSTSVHIAQWMALQGLRVLLIDATDPQATASLYHGYVPDLHIHEEDTLLPYYLGQRDDAAYAIKPTCWPNLEVIPSCLAVHRIESEIYGLHDQGKLPVAPHLLLRAAIESVWDSYDVVVLDSAPNLGIGTINVVCAADVIVVPTPAELYDYVSTLQFFTMLRDLMSNIDLNGFEPDVRVLITKFSNAIGSQSQWMDDQIRNAWGGMVLKEVVRVTDEVGKGQVRMRTVFEQAANQRSTPAAWRNAVSIWEPVCAEIFNRLVKPRWENALast
1 -68.400d1wcv1_ c.37.1.0 (1:) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  25  1........................................................................................................KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVD-LDPQGNATSGLGVRAE------RGVYHLLQGE--PLEGLVHPV--DGFHLLPATPDLVGATVELAG----------APTALREALR--DEGYDLVLLDAPPSLSPLTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPR--LRLLGILVTMYDGRT-LLAQQVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHAPTSPGAHAYRRLAEEVMARVQE.............. 244
2 -46.500d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  16  1........................................................................................................MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDP-----DVTLHDVLAGEA-NVEDAIYMTQFDNVYVLPGAVDWEHVLKA-------------DPRKLPEVIKSLKDKFDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLK--------KAGLAILGFVLNRYGRS----DRDIPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIPAVKYKPESKGAKAFVKLAEEIEKL................. 236
3 -44.800d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}  ali model 3D-neighbors follow..  14  1.........................................................................................................MRQVAIYG-KGGIGKSTTTQNLTSGLHAMGKTIMVVGC-DPKADSTRLLLGGLA-----QKSVLDTLREEGEDVEDSILKEGYGGIRCVESGGPEPGVGCAGRGIITSIN--------MLEQLGAYTDDLDYVFYDVLGDVVFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGG-------VRLGGIICNSRKVANEYELLDAFAKELGSQLIHF-VPRSPMVTKAEINKQTVIEYDPTCEQAEEYRELARKVDANELFVIPKPMTQERLEE. 263
4 -42.600d3enda_ c.37.1.0 (A:) automated matches {Rhodobacter sphaeroides [TaxId: 272943]}  ali model 3D-neighbors follow..  17  2.........................................................................................................AKVFAVYG-KGGIGKSTTSSNLSAAFSILGKRVLQIGC-DPKHDSTFTLTGSLV------PTVIDVLKDVDFHPEELFVFEGFNGVMCVEAGGPPAGTGCGGYVVGQTVK-------LLKQH--HLLDDTDVVIFDVLGDVVCGGFAALQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYK----VRLAGCVANRSRATDE------VDRFCKETNFRRL-AHMPDLDAIRRSRLKKKTLFEMDEDQDARAEYIRLAESLWRG................. 247
5 -30.000d4v03a_ c.37.1.0 (A:) automated matches {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  15  1.........................................................................................................AEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDADIGLRNLDMILGLENRIVYDILD-----VLEGRVPYEKALVKDK-RGLSLWLLPANQRANKDVIDIEKWN----------KTVEEIKNSGNYDYILVDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESM--------DKRNYKVIVNRIKWEMVKRGAMLVEDIVDILKAEIIG-IIPEEPKLVDFTNRGEPIV-LDEKFPASQAIIDTARRLMGE................. 241
6 -28.900d3ea0a1 c.37.1.0 (A:1-239) automated matches {Chlorobium tepidum [TaxId: 194439]}  ali model 3D-neighbors follow..  14  2..........................................................................................................RVFGFVSAKGGDGGSCIAANFAFALSQEDIHVLAVDISLPFGDLDMYLSGNTH-----SQDLADISNASDRLDKSLLDTMVQPSLDLIPSPATFEKIVN--------------EPERVSDLIHIAASFYDYIIVDFGASIDHVGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISR------IEIILNRADTNSRITSDEIEKVI----GRPISKRIPQDEDAMQESLLSGQSVLKVAPKSQLSKTIVDWALHL.................... 239
7 -21.900d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  10............................................................................................................YLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS-TDPASNVGQVFSQTTIQAIASVPGLSALEIDPQAAAQQYRARIV-DPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASL-LTRFDHIIFDTAPTIRLLQLGAWSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRL--VLVARLQKSTLQEVARTHLELAAINQYLVINGVLPKTEAANDTLAAAIWEREQEALANLPADLAGLPTDTLFLQPVNM............ 282
8 -19.000d1ihua2 c.37.1.10 (A:308-583) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  22............................................................................................................LIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTT-SDPAAHLSMTLN-------GSLNNLQVSRIDPHEETERYRQH-------VLETKGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREGKRFVVMDTAPTLLLLDATGAYHRTKVLLVTLPETTPVLEAANLQADLERA--------GIHPWGWIINNLLRMRAQQELPQIESVKRQHASRVALVPVLASEPTG................................................. 267
9 -12.500d1yrba2 c.37.1.10 (A:1-245) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}  ali model 3D-neighbors follow..  7  1...........................................................................................................MIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN-LDT---GVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVE------YDRLMEKFN------------------------YLNKILRLEKENDYVLIDTPGQMETFLFHEFGVMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIALNKVDLLSEEEKERHRKYFEDI--DYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY........ 241
10 -9.290d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  31............................................................................................................VGALVSPGGAGKSMLALQLAAQIALPTGPVIYLPAEDPPTAI-------------------------HHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPE---------WFDGLKRAAEGRRLMVLD--------TLRRFHIEEE----------ASGPMAQVIGRMEAIAADTGCS--------IVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQSYLSSMTSAEAEEWGVDDDQRRFFVRFGVSKANYGAPFADR............ 249
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;