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Query: gi|16082708|ref|NP_395154.1| Yop targeting protein (YPCD1.19c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFIKDTYNMRALCTALEQSAPDTIINTSKEENNSYYCATAHLLRTDVCSLVNRVGIEPLKSGSILSTLEELWQAVGIVYRLYEWQHVSDIDTNFKKLPNNSDFGLVFSVLDCDIEYVFIGKKDSEGNIEFYDPKNSLLIENDDIKKYLYDEDFHRFCIMLIISKSELEELSRESCDQECIMGLast
1 -9.760d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  10  3.............QYVNKLENFKIRETQGNNGWCAGYTMSALLNYHAEAVMRFLGQQFQFTGLTPREMIYFGQTQGRSPQL--LNRMTTYNEVDNLTKNNKGIAILGSRVESAGHAMAVKLNNGQEVIIIWN.................................................. 140
2 -8.330d5mu9a2 d.3.1.18 (A:156-293) automated matches {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}  ali model 3D-neighbors follow..  11  1.......................................MSVSSAEAQAAIARNPHIHGT--LPNATFTQIWKDSGLPGSKWREQIGKWGADSWKANGFAIFCGVMLNKAGDAAHAYNFTLTKDHADIVFFEPQNGGYLNDIGYDSYM.................................. 135
3 -6.480d4ekfa_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]}  ali model 3D-neighbors follow..  10  2.............................................................GSSEQELKAIVKDLGCGPYFLGTYDKRFPGFVSPHKLACAIVNTAGRETGGV-HWMAFAWNPRSKTCYLFEPFGFSDQRLKQVYQFEYESLLRRSAIASSPDRCITLEKSTQSVQGAC--G 123
4 -6.270d2bu3a_ d.3.1.14 (A:) Primitive phytochelatin synthase {Nostoc sp. PCC 7120 [TaxId: 103690]}  ali model 3D-neighbors follow..  8FNSNEGEKLLTSRSREDFFPLSMQFVTQVNQAYCGVASIIMVLNSSPYRVFTQDNFFSNEQGMTLDELGRLIASYGVKVKVNHASNIEDFRKQVAENQDGNFVIVNYLRQERGGHSPLAAYNEQTDRFLIMD.................................................. 173
5 -6.260d2hbja1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  14  14IPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDA........................................................................................................... 88
6 -6.180d1mjka_ a.43.1.5 (A:) Met repressor, MetJ (MetR) {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  32...........VLKILTDERTRRKVNNLRHATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINPETWEY.................................................................................................. 104
7 -6.070d2cpra1 a.60.8.4 (A:483-593) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  20LNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQA........................................................................................................... 94
8 -5.980d2ehza2 d.32.1.0 (A:138-302) automated matches {Pseudomonas sp. [TaxId: 69011]}  ali model 3D-neighbors follow..  7..........................................................VTGDQGLGHCIVRQTDVAEAHKFYSLLGFRGDVEYRIPLPNGMTAELSFMHCNARDHSIAFGAMPAAKRLNHLMLEYTHMEDLGYTHQQFVKN............................... 99
9 -5.930d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}  ali model 3D-neighbors follow..  11  2VNAKGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIIS------GSNVTRIEEDANGRVQAVVAMTPNGE..................................................................... 108
10 -5.920d1uapa1 b.40.3.3 (A:25-154) Procollagen c-proteinase enhancer protein PCOLCE {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  3..............................APTCNFCASSLVVTATVKSMVREPG-EGLAVTVSLIGAYKTGGLDLPSPPTGASLKFYVPCKQCPPMKKGVSY-LLMGQVEENRGPVL--------------------------------PPESFVVLHRPNQDQILTNLSKRKCPSQPV.. 130

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.