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Query: gi|16082715|ref|NP_395161.1| secreted effector protein (YPCD1.26c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFELast
1 -69.500d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}  ali model 3D-neighbors follow..  100  1.................................KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNS....................... 353
2 -35.300d1o6va2 c.10.2.1 (A:36-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}  ali model 3D-neighbors follow..  21  18.....................................................................LAEKMKTVLGKTNVTDTVSQLDQVTTLQADRLGIKSIDGV-EYLNNLTQINFSNNQLTDITPKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKPLLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLLTNLDELSLNGNQLKDIGTLLTNLTDLDLANNQISNLAPLLTKLTELKLGANQISNISPLLTALTNLELNENQLEDISPILKNLTYLTLYFNNISDISPVLTKLQRLFFYNNKVSDVSSLLTNINWLSAGHNQISDLTPLANLTRIT....... 373
3 -29.900d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  23  11...................................................................................................................................HLRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKITEIKD-LKNLHTLILINNKISKISPFAPLVKLERLYLSKNQLKELPKMPKTLQELRVHENEITKVRKFNGLNQMIVVELGTNPLKSSGQGMKKLSYIRIADTNITTIPQLPPSLTELHLDGNKITKVDA-LNNLAKLGLSFNSISAVDN-TPHLRELHLNNNKLVKVPGGHKYIQVVYLHNNNISAIGTKKASYSGVSLFSNPVQYWEIQPSTFRCVY.......................... 298
4 -29.700d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}  ali model 3D-neighbors follow..  16  2.......................................................................................................................................SITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLLSNLQVLYLDLNQITNISPLLTNLQYLSIGNAQVSDLTPLLSKLTTLKADDNKISDISPLLPNLIEVHLKNNQISDVSPLTSNLFIVTLTNQ.............................................................. 227
5 -28.900d2o6qa_ c.10.2.0 (A:) automated matches {Inshore hagfish (Eptatretus burgeri) [TaxId: 7764]}  ali model 3D-neighbors follow..  21  1...........................................................................................................................................NEALCKKDGCSCNNNKNSVDCSSKKLTAIPSIPADTKKLDLQSNKLSSLPSFHRLTKLRLLYLNDNKLQTLPA-LKNLETLWVTDNKLQALPIFDQLVNLAELRLDRNQLKSLPP-LTKLTYLSLGYNELQSLPK-LTSLKELRLYNNQLKRVPE-LTELKTLKLDNNQLKRVPE-LEKLKMLQLQENPWDCTCNMAKWLKKKADEGLGGVDTAGCE-AVLEITEKDAASDCVSP................................... 269
6 -28.500d1h6ta2 c.10.2.1 (A:36-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}  ali model 3D-neighbors follow..  21  2.......................................................................................................................................TITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQLNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLLPQLESLYLGNNKITDITVLLTKLDTLSLEDNQISDIVPLLTKLQNLYLSKNHISDLRALLKNLDVLELFSQ.................................................................................. 205
7 -26.600d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  28  9.....................................................................VASHLEVNCDKRNLTALPPLPKDTTILHLSENLLYTFSL--ATLMPY--------------TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLLPALTVLDVSFNRLTSLPLLRGLGELQELYLKGNELKTLPP-TPKLEKLSLANNNLTELPALNGLENLDTLLLQENSLYTIPKGFHLLPFAFLHGNPWL........................................................................................................................................... 208
8 -24.700d1xeua1 c.10.2.0 (A:35-216) automated matches {Listeria monocytogenes [TaxId: 1639]}  ali model 3D-neighbors follow..  23  1..........................................................................ESIQRPTPINQV-PGLANAVKQNLGKQSVTDLVSQLSGVQNFNGDNSNIQSLAGMQTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSCLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQ.................................................................................................................................................................. 182
9 -23.200d4cnca_ c.10.2.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  11..........................................................................................EAARTVKCVNRNLTEVPT-------------------DLPAYVRNLFLTGNQLAVLPARPPLAELAALNLSGSRLDEVRA-LPSLRQLDLSHNPLADLSPFSGSNASVSAPSPLVELILNHIVPPEDERQNRSFEGMVVAALGRALQGLRRLELASNHFLYLPRDLPSLRHLDLSNNSLVSLTY-LTHLESLHLEDNALKVLHAELQGLPHIRVFLDHMADMVTWLKETEVVQGKDRLTCAYPEKMRNRVLLELNSADLD........................................................... 284
10 -22.900d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  25  1.....................................................................................................................................RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALACLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS-----------------AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL...................................................................................................................................................... 112
11 -22.000d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  8...................................................................CYNEPKVTTSCPQQGLQAVPVIPAASQRIFLHGNRISHVPA--ASFRAC--------------RNLTILWLHSNVLARIDAFTGLALLEQLDLSDNQLRSVDP-LGRLHTLHLDRCGLQELGPFRGLAALQYLYLQDNALQALPD-LGNLTHLFLHGNRISSVPEFRGLHSLDRLLLHQNRVAHVHPHLGRLMTLYLFANNLSALPT-LRALQYLRLNDNPWV....................................................................................................................... 238
12 -20.800d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {French bean (Phaseolus vulgaris) [TaxId: 3885]}  ali model 3D-neighbors follow..  20  42..LCDTDTQTYRVNNLDLSGLNLPKIPSSLANLPYLNFLYIGGNNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ---------IKTLVTLDFSYNALSTLPPSISSLPNLVGITFDGNRISSFSKLFTSMTISRNRLTKIPPTFANLNLAFVDLSRNMLEDASVLFGSTQKIHLAKNSLADLGKVGLSKNLNGLDLRNNRIYTLPQGLTQLHSLNVSFNNLCEIPQGGNLQRFDVSAYANNKC................................................................................................................................................................ 303
13 -20.500d4rcab_ c.10.2.0 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  13.........................................................................................IEGDLHVDCEKKGFTSLQRFTAPTSQFYHLFLHGNSLTRLFPNAVSLHMENNGLHEIVPFLGLQLVKRLHINNNKIKSFRK-LDDLEYLQADFNLLRDIDPFQDLNKLEVLILNDNLISTLPANVVPITHLDLRGNRLKTLPYLEQIPGIAEILLEDNDLLSLKEWLENIPKNALIGRVVCEAPTRLQGKDLNETTEQDL........................................................................................................................ 239
14 -20.300d1a9na_ c.10.2.4 (A:) Spliceosomal U2 small nuclear ribonucleoprotein A` / U2A` / Lea1 protein {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  1.......................................................................................................................................VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDDLTELILTNNSLVELGDLASLKSLTYLCILRNPVTNKKHKVPQVRVLD.................................................................................................................................................. 145
15 -20.100d2xwtc_ c.10.2.0 (C:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  21  3..................................................................................................................................................SPPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSFSNLPNISRIYVSIDTLQQLES-LSKVTHIEIRNTRLTYIDPLKELPLLKFLGIFNTGLKMFPDLT-FFILEITDNPYMTSIPVLCNETLTLKLYNNGFTSVQG-TKLDAVYLNKNKYLTVIDKVYSGPSLLDVSQTSVTALPSGLEHLKELIARNT.............................................................. 234
16 -19.700d5gmkb_ c.10.2.4 (b:) Spliceosomal U2 small nuclear ribonucleoprotein A` / U2A` / Lea1 protein {Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId: 559292]}  ali model 3D-neighbors follow..  17  9....................................................................................................................................IDAPQYYVDHFNGKYNVDKCVILRDLQLETDMPSSLKHLTKPTHILDLTNNDLIMIPDLSRRDDIHTLLLGRNNIVEVDGRPMNVQNLTLSNNSIRRFEDLQRLRTLKNLTLIGNQVCHLANLVPHLETLD.................................................................................................................................................. 155
17 -19.500d1ds9a_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}  ali model 3D-neighbors follow..  17  1....................................................................................................................................MAKATTIKDAIRIFEERKSVAEKVELHGMIPPIEKMDATLSACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEILDKLEDLLLAGNPLYN.......................................................................................................................................... 154
18 -19.100d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  9.........................................................................................................................................................SNRVFLCQESKVTEIPDLPRNAIELRFVLTKLRVIQKFSGFGDLEKIEISQNDVLEV-SNLPKLHEIRIEKNNLLYINPFQNLPNLQYLLISNTGIKHLPDVSLQKVLLDIQDNI--------------NIHTIERNSFVGLSFESVILWLNKNGIQEIHN-TQLDELNLSDNNNLEELPN-ASGPVILDISRTRIHSLPENLKKLRARSTYNLK......................................... 236
19 -19.100d2v70a_ c.10.2.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  11.............................................................................................TTVDCSNQKLNKIPE-------------------HIPQYTAELRLNNNEFTVLEAFKKLPQLRKINFSNNKITDIEE-ASGVNEILLTSNRLENVQHFKGLESLKTLMLRSNRITCVGN-LSSVRLLSLYDNQITTVAPFDTLHSLSTLNLLANPFN............................................................................................................................................................... 163
20 -18.500d3g39a_ c.10.2.0 (A:) automated matches {Sea lamprey (Petromyzon marinus) [TaxId: 7757]}  ali model 3D-neighbors follow..  22  11.............................................................................................TTVDCSGKSLASVP-------------------TGIPTTTQVLYLYDNQITKLEPFDRLTQLTRLDLDNNQLTVLPA-LTQLTQLSLNDNQLKSIPRFDNLKSLTHIWLLNNPWDCACS------------DILYLSRWISQHPGLVFGYLNLDPDSARCSPVRAVTEASTSPSK............................................................................................................................................. 166
21 -17.600d2v9tb_ c.10.2.0 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  14.............................................................................................NIVDCRGKGLTEIPT-------------------NLPETITEIRLEQNTIKVIPPFSPYKKLRRIDLSNNQISELAP-LRSLNSLVLYGNKITELPKFEGLFSLQLLLLNANKINCLRV-LHNLNLLSLYDNKLQTIAKFSPLRAIQTMHLAQN.................................................................................................................................................................. 162
22 -16.700d2wfha_ c.10.2.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  23  10.........................................................................TVVRCSNKGLKVLPKIPRDVTELYLDGNQFTLVPKELSNYKHL-----------------TLIDLSNNRISTLSNFSNMTQLLTLILSYNRLRCIPP-LKSLRLLSLHGNDISVVPEFNDLSALSHLAIGANPLY......................................................................................................................................................................................................... 136
23 -16.000d2q4gw_ c.10.1.1 (W:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  21  2......................................................................LDIQSLDIQCEELSDLLPLLQQCQVVRLDDCGLTEISSALRVNPALAELNLRSNELGD---KIQKLSLQNCCLTGSSTLRTLPTLQELHLSDNLLGDLLDPQCRLEKLQLEYCSLSAASVLRAKPDFKELTVSNNDINELKDSPCQLEALKLESCGVTSCGIVASKASLRELALGSNKLPGLLHPSSRLRTLWIWECGLCRVLRAKESLKELSLAGNELETLLEPGCQLESLWVKSCSFSSVLAQNRFLLELQISNNRLEDLGQPGSVLRVLWLADCDLAATLLANHSLRELDLSNNCLGDVRQPGCLLEQLVLYDIYWSE.................. 440
24 -15.400d4xsqa_ c.10.2.0 (A:) automated matches {Branchiostoma floridae [TaxId: 7739]}  ali model 3D-neighbors follow..  14  10......................................................................................................................................................SLYGEMVVACGGMGLTEIPEIPHRAVYLVLKDNNITKITSFKGLRNLQGIDLSNNKINHISS-LGHLDDIDLSRNELTSVSEAKAQGRRFFVYLANNRMAWLAQELAGGSKTFGDRHMECATPAALAGRGLSEIPQTSFV....................................................................................................................... 171
25 -14.300d2ca6a_ c.10.1.2 (A:) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}  ali model 3D-neighbors follow..  15  4.......................................................................SIEGKSLKLDAITT--LEDDSVKEIVLSGNTIRWLSENIASKKDLEIAEFSDIFTGRVKPKLHTVRLSDNAFGPIDFLSKHTPLEHLYLHNNGLGP-----QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN--QSHRLLHTVKMVQNGIRPLEGLAYCQELKVLDLQDNTFT------------HLGSSALAIALKSWPNLRELGLNDCLLSA-KLENIGLQTLRLQYNEIELIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG----------RGELDELDDME......................................... 343
26 -12.600d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  8..................................................................................................................................HGSSGLRCTRDGALDSLHLPGAENLTELYIENQQLQHLELRLGELRNLTIVKSGLRFVAPFHFTPRLSRLNLSFNALESLSWKTLSLQELVLSGNPLH..................................................................................................................................................................................... 116
27 -11.700d2bm5a_ b.80.8.1 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}  ali model 3D-neighbors follow..  11  17............................................................................................................................................................................................................................................EDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLC.......... 179
28 -11.200d4wp6a_ c.10.2.0 (A:) automated matches {Chaetomium thermophilum [TaxId: 759272]}  ali model 3D-neighbors follow..  18  9..............................................................................................................................................................................LARRYNAEQKLLDLSALGTDETLSSLGSFNNQSLAE-----KSFKALMHLVSNEYKDPEQKNEAIQAVSLARNDILDV--------------GQVYSLAVTLPRLRRLDLSGNNLENL--------------SKISKWQQEFRFLEELHLTGNPVTTLPNYATEIKKWFPSLQILDGQQ........................................................ 154
29 -10.800d2j8ka1 b.80.8.1 (A:2-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}  ali model 3D-neighbors follow..  15  4............................................................................................................................................................................................................................................KLRQLYAAGERDFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTG----ANLEDANLEGTILE 172
30 -10.200d3rw7a2 c.10.2.3 (A:203-362) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  23  8............................................................................................................................................................................................................EQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCTLRIIEENIPELLSLNLSNNRLYRL--------------DDMSSIVQKAPNLKILNLSGNELKSEREL--KLEELWLDGNSL---------CDTFRDQSTYISAIRERFPKLLRLD.............................................. 150
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.