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Query: gi|16082716|ref|NP_395162.1| secreted effector protein (YPCD1.28c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTINIKTDSPIITTGSQLDAITTETVKQSGEIKKTEDTRHEAQAIKSSEASLSRSQVPELIKPSQGINVALLSKSQGDLNGTLSILLLLLELARKAREMGLQQRDIENKATITAQKEQVAEMVSGAKLMIAMAVVSGIMAATSTVASAFSIAKEVKIVKQEQILNSNIAGREQLIDTKMQQMSNIGDKAVSREDIGRIWKPEQVADQNKLALLDKEFRMTDSKANAFNAATQPLGQMANSAIQVHQGYSQAEVKEKEVNASIAANEKQKAEEAMNYNDNFMKDVLRLIEQYVSSHTHAMKAAFGVVLast
1 -5.920d2pgca1 d.58.4.23 (A:1-206) Uncharacterized protein GOS_2596953 {Environmental samples [TaxId: 33858]}  ali model 3D-neighbors follow..  6  18..........................................................................................................YRETMARLMSSYSKDLNAGAKGTRFGSIGTG----HAGSLIFIQFYDDLTGYQKALEIQSKSSVFKEIMDSGKANIYLRNISTSLPTKFEQSYEHPKYIVLTRAEAAMSDKDKFLNCINDTASCFKDNGALTLRFGNLLTG--------SNVGNYLLGVGYPSMEAIEKTYDELLAH--SSYKELMTFAKVNMRNIIKIL 206
2 -5.130d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  3  2..........................................................................................KATQKVSEKVGGAEGTKLDDDFKEMERKVDVTSRAVME-----IMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSLDIEVKQNFIDPLQNLHDKLREIQSALQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALV 213
3 -4.700d2jdig_ c.49.2.1 (G:) F1 ATP synthase gamma subunit {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  8  209....................................................................................LANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLRQAVITKELIEIISGAAAL..................................................................................................................................................................... 272
4 -4.610d3q1si_ a.26.1.3 (I:) Interleukin-22 (IL-22) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  61..................................................................LEEVLFPQSDRFQPYMQEVVPFLARLSNRLSTCHIEGDDLHIQRNVQKLKDTVKKLGESGEIKAIGEL............................................................................................................................................................................ 128
5 -4.440d4i2aa1 a.60.6.0 (A:149-242) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  8  19...................................................................................LFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIEDGESSEAKAVLN........................................................................................................................................................ 94
6 -4.440d2oufa_ a.292.1.1 (A:) Hypothetical protein HP0242 {Helicobacter pylori [TaxId: 210]}  ali model 3D-neighbors follow..  12  19...........................................................................KKELERLLELLALLETFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANILSG......................................................................................................................................................................... 80
7 -4.420d2bs2c_ f.21.2.1 (C:) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  7  84.................................................................................AFVFAVFIAHAFLAMRKFPINYRQYL------TFKTHKDLMRHGDTTLWWIQAMTGFAMFFLGSVHLYIMMTQPQTIGPVSSSFR............................................................................................................................................ 162
8 -4.280d2fd5a2 a.121.1.1 (A:77-180) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  8  30........................................................................................LPATLAEVARLPEGFREVLSRHVEIMVTSLAESPEETDVALADLVLMIGGLALARALGPGELSDRVLRAAKQAVN............................................................................................................................................... 104
9 -4.270d4lzda1 a.60.6.0 (A:137-230) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  19...................................................................................GLSEALEILAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRLEHGVCEEVERVRR........................................................................................................................................................ 94
10 -4.230d2np3a2 a.121.1.1 (A:100-211) Putative transcriptional regulator SCO0857 {Streptomyces coelicolor [TaxId: 1902]}  ali model 3D-neighbors follow..  11  25.....................................................................................LMTMVRSAAIHRAAAARLRETATGILARALGGVITGEDAMLRTSMVATQLVGLA....................................................................................................................................................................... 78
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.