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Query: gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSALITHDRSTPVTGSLLPYVETPAPAPLQTQQVAGELKDKNGGVSSQGVQLPAPLAVVASQVTEGQQQEVTKLLESVTRGAAGSQLISNYVSVLTKFTLASPDTFEIELGKLVSNLEEVRKDIKIADIQRLHEQNMKKIEENQEKIKETEENAKQVKKSGIASKIFGWLSAIASVIVGAIMVASGVGAVAGAMMVASGVIGMANMAVKQAAEDGLISQEAMKILGPILTAIEVALTVVSTVMTFGGSALKCLANIGAKLGANTASLVAKGAEFSAKVAQISTGISNTVGSAVTKLGGSFAGLTMSHAIRTGSQATQVAVGVGSGITQTINNKKQADLQHNNADLALNKADMAALQSIIDRLKEELSHLSESHQQVMELIFQMINAKGDMLHNLAGRPHTVLast
1 -5.200d2hhpa1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  10  2..............................................................................................................................................KPNVFRIALRAIK-AQRRAVYANIFGFPGGVAWAMLVARICQLYPNACSAVILLKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKK............................................................................................................................................................. 121
2 -5.100d1sqha_ d.108.1.5 (A:) Hypothetical protein cg14615-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  18  165......................................................................................................PSEFEI-------------RRLRAEDAAMVHDSWPNKGEGSLTYLQA---LVRFNKSLGICGELIAWIFQNDFSGLGMLQVRRGLGGLLAAAMSREIARGEEITLTAWIVATNWRSEALLKRIG............................................................................................................................................................................... 281
3 -4.710d3iam2_ c.47.1.21 (2:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  20  3....................................................................................................................................FDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEGWIREIARLVTGKLQVCATLSCLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGPVIQV.......................................................................................................................................................................... 135
4 -4.710d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}  ali model 3D-neighbors follow..  12  1................................................................................................................................................DRMYELEYPSPEVSGQTAGG----------PTLIVALQGYADAGHA-VESSSSHLMDALDHRLIASFNNDELIDYRSRR---PDLRWGDFSNAVVDLVEKFGVENTICLYAAPMTVP-------TRPTVVTAHGNSTDRLKDQVSLDTRMTVPGSASLMLEKLLKDKGKNVSGYTVHVPHYVSASPYPAATLKLLQSIADSADLNLPLLALERDAEKVHRQLMEQTEESSEIQRVVGALEQQYDSELER........ 267
5 -4.650d2ciwa2 a.39.3.1 (A:120-298) Cloroperoxidase {Fungus (Caldariomyces fumago) [TaxId: 5474]}  ali model 3D-neighbors follow..  17  2................................................................................................SNDFIDNRNFDAETFQTSLDVVAGKTHFDYADMNEIRLQRESLSNELDFPGWFTESKPIQNVESGFIFALVGWVTSASSAVLAASVTSTPSSLPSGAI............................................................................................................................................................................................................... 142
6 -4.530d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  14  7............................................................................................................................................KWDQKGMDIAYEEAALGYKEG-------------GVPIGGCLINNKDGSV-----LGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRC................................................................................................................................................. 104
7 -4.480d1kn0a_ d.50.1.3 (A:) The homologous-pairing domain of Rad52 recombinase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  4........................................................................................................................QCQYTAEEYQAIQKALRQRLGPEYISSRMAGGGIEGHRVINLANEMFGWAHSITQQNVGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGL------KRALRSFGNAL............................................................................................................................................................................ 138
8 -4.460d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}  ali model 3D-neighbors follow..  18  38...................................................................................................YASRKAMDIE-EKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQIEESKHRGLERLFGTMDRLLEASLEELIEVEEVGELTARAILETLKDPAFRDLVRRLKEAGV......................................................................................................................................................................................... 176
9 -4.380d1ueqa1 b.36.1.1 (A:8-118) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  12....................................................................................................................................................TFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSV-IPDGPAAQDGKMETGDVIVYINEVCVL-----GHTHADVVKLFQSVPIGQSVNLVLC.................................................................................................................................................................. 96
10 -4.320d2f9ia1 c.14.1.0 (A:1-314) automated matches {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  12  3........................................................................................................DFEKPLFEIRNKIESLKESQDKNDVDLQEDMLEASLERETKKIYTNLKPWDRVQIARLQERP---LDYIPYIFDSFMEMIGGIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMQAEKFNRPIFTFIDTKGAYPGKAAEERG--QSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVISEPLGGAHKDAIKSAFVAQLDSLESLSR---EIANDRFEKFRNI....... 309

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 9 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.