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Query: gi|16082692|ref|NP_395138.1| putative transposase (YPCD1.01) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVALast
1 -123.000[L] COG4584 Transposase and inactivated derivatives  ali follow..  41  1MISYEDYMEVQILRRQGCSLRAIATETGMAVNTIRKYLVSGAPERK--PREPVVGKLEPFKAFIQSRVDAARPDWIPATVLLREIEERGYTGKLRIVQEYLQTLRPASRPDPVVRFETEPGQQMQMDWIETGHKHGMLAAFVATLGYSRASYVEFVSDMRLETLLTCHVRAFDAFGGVTKEILYDNMKTVILQRNAYGKQQHRYQPGFADFAKHYGFAPRVCKPYRAKTKGKVERMNGYLRYSFWVPLASKLKQIGLAADKDLCNQQVGLWLRDVANVRVHGTTKRVPVDVLREERPHLLPTPALYAGRRAGATPHETPKPASRFATPDWHVCLQHPLSV 343
2 -30.300[L] COG2801 Transposase and inactivated derivatives  ali follow..  14  7....EKIEIIRLVEQSTLPVRRTLAQIGVPRATFYRWYDLYQTGGPARPSRVWNRIPEDVRAAILEMALEHSELS-PRELAVRFTDSQGYFVSEASVYRLLKSHIVMKAAKAFTDKTTAPNQMWQTDFTYFKIGWGWVYLSTILDDFSRYVIAKLCTTMKAGDVTDTLELALSAS-GCDQVSVRHKPRL------LSDNGSSYISGELADWLGKQEMKHVRGAPYHPQTQGKIERWHQTLKNRIL---------LENYFLPGDLEAQIGAFIEHYNHARYHESLEVTPADAYFGRAADILRRRASVKRQTLEHR.......................... 317
3 -19.500[L] COG2826 Transposase and inactivated derivatives, IS30 family  ali follow..  14  59.LTLSEREEIRAGLSAKMSIRAIATALNRSPSTISREVQRNRGRRYYKAVDANNRA-EQISGWLRRTKPRQKTLRISPETIYKTLYFRSREALHHLNIQHLRRSHSLRHGRRGTPIHERSRNDNRRSLGHWEGDTKNSHIATLVDRKSRYTIIVRLRGKDSVSVNQALTDKFLSLSELRKSLTWDRGMELA---------------RHLEFTVSTGVKVYFCDPQSPWQRGTNENTNGLIRQYFPKK-----------TCLAQYTQHELDLVAAQLNNRPRKTLKKTPKEIIERG............................................. 378
4 -16.700[L] COG3335 Transposase and inactivated derivatives  ali follow..  11  32..ALVMRARLVLAAAAGEPNSEIAERLQLTRATVARFLERRINGLYDELRPGKPRTIDDERVAELIKTTLHTKPADGSTHWSVRAVAAETSISPTSVHRYFKLLGLQPHRSETFKLSTDAFFIEKL---HDYVRHGTTTLFAALNVLNGAVLAECKPRHRHQEFLAFLRSIDKAVADLDVHCIVDNYSS---------------HPKVKAWLAARPRWHMHFIPTYSSWLNQVERFFAIITDKAI--------RRGSFTSVKELVQKIDHFVAHYNQNCKPFAWTATADSILSKLSRLCERISGTGH................................. 363
5 -13.900[S] COG1710 Uncharacterized protein conserved in archaea  ali follow..  30  93.YSYKTLMMIEELLKKGKTPREISRDLGIPIRTLYYLLKKREVSEIE..................................................................................................................................................................................................................................................................................................... 138
6 -12.700[L] COG3676 Transposase and inactivated derivatives  ali follow..  8  13.IKEKSTERTAPFFVLEVTARSAADILGIHPNSAALFYRKIRTVINHHLALAADEVFEGPVE-PDESDFGGRRKGRRGRGAAGKVVVFGILKRNGRVYTVVVDNAKSETLLPVIKKKIMPDSIVYTDSLSSYDKLDVSGFIHYRINHSKECADRQNHINGIENFWNQAKRVLRKYNGIDRKSFPLFLKECEFRFNFGTPS............................................................................................................................................ 210
7 -10.600[S] COG2739 Uncharacterized protein conserved in bacteria  ali follow..  10  18LLTTKQKSYVSFYYLDDYSLGEIAEEFEVSRQAIYDNIKRTEESLEKYEEKRKYQQREKLFDQLEAQLTKKNFLDEQVKDTLEQLKN............................................................................................................................................................................................................................................................. 108
8 -10.200[S] COG1356 Uncharacterized protein conserved in archaea  ali follow..  25  7....EQQIKVLVLRAKGLKQSEIARILKTTRANVSILEKR............................................................................................................................................................................................................................................................................................................ 42
9 -10.100[L] COG3415 Transposase and inactivated derivatives  ali follow..  11  30..RVLQRLYFIRYLYRGMSVEEAAELVGITKATGYTWLKRWNTRGYEEFGGGRPSKLTK-KEELKEMLKERDS---TTKEVQELIEAKGVSYSSWQVRRILKSFGMKYAKPYQKDYRKPENAEDSL...................................................................................................................................................................................................................... 157
10 -9.870[R] COG2522 Predicted transcriptional regulator  ali follow..  14  16IFPSIRASIAKILVEEKMSKYSVAKMLGATPTAVSYYISGKRGEKFV----DRIIRDEEIYSIVREAASLLVEAHEREEKSDEKELMGKLQVLMCKACSRLNM............................................................................................................................................................................................................................................. 115
11 -9.770[R] COG1342 Predicted DNA-binding proteins  ali follow..  17  37SLTVEELEALRLVDIEGLRQEDAASRVGISRRAFWEDLKSARMKVAIALSKGKAIEIK.......................................................................................................................................................................................................................................................................................... 94
12 -9.600[S] COG5352 Uncharacterized protein conserved in bacteria  ali follow..  27  4..TDERVELLRKLWSEGLSASQIAAQLGVSRNAVIGKVHRLKLSGRGRATATPARQ............................................................................................................................................................................................................................................................................................ 58
13 -9.380[S] COG5484 Uncharacterized conserved protein  ali follow..  18  2...VDKHIQAYKDYAKGMKYKDLAEKYGVSVNTIKSWKQRHGWQRKKGAPLKKGVH............................................................................................................................................................................................................................................................................................ 54
14 -9.170[S] COG3388 Uncharacterized protein conserved in archaea  ali follow..  22  14MDTLKRHISVINVREQPIGIIKLSQETGIPEHKIRYSLRILEQENIISPSREGAILTPDFIEHKEQIIADAEKVLEEATKIAEDVRK............................................................................................................................................................................................................................................................. 102
15 -9.020[K] COG1654 Biotin operon repressor  ali follow..  19  1MKDTTVPLTLISLLADGHSGEQLGERLGMSRAAINKHIQTLRDWGVD..................................................................................................................................................................................................................................................................................................... 49
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.