current user: public
If you have questions about the server, please let us know.

Query: gi|16082696|ref|NP_395142.1| secretion chaperone (YPCD1.05c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst MYSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQTSSLISPPRSFSLast
1 -11.600[S] COG5465 Uncharacterized conserved protein  ali follow..  8  36.....DVIEQVAHSNDWTFERTGDDEIAISVAGHISFSWMEDFEALHLACAFDKVAEPRVNEVMRLSLINEKLLMGHFDLWQQEGAIMYRQSLLLVEPTSRQVEVLLSAALEACEAYFQAFQFVVWSGVS 170
2 -6.780[V] COG1787 Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes  ali follow..  7  54.HEFEDYLFVLLAGLGYNETYQTKKSRDFGAD---LLFNDSSGARTVVQAK-DALGVKAIQEVFTAKVYYQAEKAIVITSTESDPCRRLASAAEVKLIEREALQEIIALFKREQMKQAQDVIEAPPEKIK 183
3 -5.310[S] COG5440 Uncharacterized conserved protein  ali follow..  5  3....QEMIKKWLDEEGFLRMEVPDENARFHYVVIDIIQPAGKDDMILIACAT-SVSPEHQAGIVRFTLNRFGVDFQLDHPENVLNSYLVTDEIFFDGLSKDRLISSIKNVFRAKLQVMWMIQE....... 141
4 -5.220[S] COG3581 Uncharacterized protein conserved in bacteria  ali follow..  9  217.......IKELADGVSDIVSLGNQTGEGWFLTAEMVELIEGGTENVICMQPFACLPNHVTGKGMIKELKRRYPKANIAAVDFDPGA------------SEVNQLNRIKLMLSTAFKNLEDTNNIELDAAS 327
5 -5.220[J] COG1490 D-Tyr-tRNAtyr deacylase  ali follow..  11  2.....RAVIQKTVGAKVDVVSEAGTETCGKIDGGFVVLLGVTHS------DTEKDARYIADKIAHLRVFEDEAGKLNLSLKDVGGAVLLVSQFTLQAAPAEQAQQLYLRTAELLRG.............. 119
6 -4.860[D] COG3095 Uncharacterized protein involved in chromosome partitioning  ali follow..  13  47LMDFQEYLEEFYARYNVELIRAPEGFFYLRPRSTTLIPRSVLSELDMMVGKILCYLYLSPERLANEGIFTQQELYDELLTLADEAKLLVNNRSTGSDVDRQKLQEKVRSSLNRLRRL............. 165
7 -4.720[V] COG1715 Restriction endonuclease  ali follow..  9  169.ARFEVIVLDVLHRLGYGGHRGDLQRVGGTGDGGIDGIISLDKEKVYVQAK-GTVGSAEVRGFYGALPEQKVKRGVFITTSGFTAHARDYAN-GLVLVDGDRLVHLMIDN.................... 284
8 -4.580[S] COG4012 Uncharacterized protein conserved in archaea  ali follow..  9  98FRMFESLLRKNPGIEGFLFHHREIPPEFNRMRDAASSVLDYVRAEVYVVAIAGCALQVKEFPALLVNFGNSHLTAAIVDEDYRIKALLEHHTPVLRRRGVDEIKSLLERFER.................. 214
9 -4.580[S] COG4127 Uncharacterized conserved protein  ali follow..  6  197.DEMQNLVAGVLRSMGYKTQVSPAGA-GFGFENPRIIVEVKHRREQMIRSFIGGRHKDDRGLYVSTG-----------GFSKDARYEADRSTIPLTLWTLDDLVRALVENYEQVD............... 313
10 -4.440[JD] COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system  ali follow..  7  27KKKLRERLENPRVPASQLHGRKDQYKIKLRGAGYRLVYSVEDEIITVTVIGVGKRENDAVYKMTRHR............................................................... 93
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 7 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.