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Query: gi|16082703|ref|NP_395149.1| plasmid-partitioning protein SopA (YPCD1.13c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDLKSTLDRCIERGQFMTQEIAKSQFGNDSPAARTITRRWRITEAAELVGVTPQTIRNYEDSGKLPPPDTAMIGRVEQRTGYSIQQINDMRDVFKTRLSKPKGENPVVLAIAAHKGGAYKTSTSVHIAQWMALQGLRVLLIDATDPQATASLYHGYVPDLHIHEEDTLLPYYLGQRDDAAYAIKPTCWPNLEVIPSCLAVHRIESEIYGLHDQGKLPVAPHLLLRAAIESVWDSYDVVVLDSAPNLGIGTINVVCAADVIVVPTPAELYDYVSTLQFFTMLRDLMSNIDLNGFEPDVRVLITKFSNAIGSQSQWMDDQIRNAWGGMVLKEVVRVTDEVGKGQVRMRTVFEQAANQRSTPAAWRNAVSIWEPVCAEIFNRLVKPRWENALast
1 -64.500[D] COG1192 ATPases involved in chromosome partitioning  ali follow..  19  1........................................................................................................MAKIISTVNMKGGVGKTTLTVNLATCLAKYQKRVLVLD-LDSQISATLSLMAPHDFARKKGKTLSYLLANSKLDIFDIICPCQIEGLELIPGDIELYDEYLVSEKLHQAAIANKFEGTLIKEMLAPVLEEYDFVILDCAPGYNLLTRSGIAASDFYLLPARPEPLSVVGMQLLERRIEKLKESHKASDNINLIGVVFILSGGLMSRYYNQVMRRVQTDFTGQLFQQSIPMDVNVAKAVDSFMPVVTSMPNTAGSKAFIKLTQEFLQKVEA.............. 296
2 -43.800[P] COG1348 Nitrogenase subunit NifH (ATPase)  ali follow..  15  1.........................................................................................................MRQVAIYG-KGGIGKSTTTQNLTSGLAELGKKIMVVGC-DPKADSTRLLLGGLA----QKTVLDTLREEGEDVDLDTIMKTGFGNIKCVESGGPEPGVGCAGRGIITSIN--------MLEQLGAYEDELDYVFYDVLGDVGFAMPIREGKAKEIYIVASGEMMAMYAANNISKGISKFANTGG-------VRLGGIICNSRKVKNEKELLEAFAKELGTQLIYF-VPRSHEVQKAEINKQTVIQFNPKDEQADEYRALAKAIDGN................. 247
3 -38.800[D] COG2894 Septum formation inhibitor-activating ATPase  ali follow..  15  1........................................................................................................MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVY----DFVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALT--------------REGVAKVLDDLKADFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVI-LDINADAGKAYADTVERLLGE................. 249
4 -28.300[D] COG0455 ATPases involved in chromosome partitioning  ali follow..  16  5...............................................................TGPVIQRDSRRRTGMTNKMIYDQASGLRRLTQPSVTK-------VISVTGGKGGVGKSNVTLGMAICMAKQGKKVMVLDADLGLANVDVMLGIRPKRNLGH-------VLAGECELKDAIVEGP-HGIRIIPATSGTQSM----------TELSHAQHVGLIRAFGTLEDEMDILLIDTAAGISDMVVSFSRAAQDVVVVVCDEPTSITDAYALIKLLSK-------EHQVQRFKIVANMVRSYREGREAKLTLVTERFLNVSLLVACIPLDDNVRQAVKRQKIVVDAYPRSPAALAISSLANKALTWPIPRTPSGHLEFFVER. 299
5 -28.200[U] COG4963 Flp pilus assembly protein, ATPase CpaE  ali follow..  14  3..................................................................................................DPEAEPLGRNIAFIGAKGGVGSSTIAHNCAFGISSLSTETILADMDLAYGTANIDFDQDPAQGMAE---AVFSPERLDEVFLDRLLTKCSDHLSLLAAPSLLDRTYD--------------DRQAFLPILEVLQRSAPVAVLDLPHQWCDWTRAVLAEADEVVITAVPDLANLRNTKNLFDALIKLRPNDKL------PHLVLNQVGMPKR--PEITPADFLEPLEIEPIAIIPFDAQLFGNAANSGRMISEMDEKSQTAETFSQIAHTITGRSVLR............. 256
6 -26.900[D] COG3640 CO dehydrogenase maturation factor  ali follow..  13  2......................................................................................................EGFGMPKLIISGRGGSGKSTLVTLIAHTLKEQKKRVLVVDSDESNIGLSGILGIEPA------EKTLMDYLGGKPRVMKKLRSMIRDGLESLSQEFVCWVGSLGLMQIGKIDHAMEGMGAVTRDFLNHVREEDQWVLVDTEAGVEHFGRGIVEGADAVVMVVDPSSDAVLLAEKAAKLTHEADKRF---------GVILNKIDEETEPILTELLTSE-----GNEIKGVLPYSPAITKMNLKGESLGAYAVKNEVDEIIRELMK...................... 262
7 -24.500[D] COG0489 ATPases involved in chromosome partitioning  ali follow..  14  71......................................................................................AETLRNVKLTADVVIQERQCRVIGVISCLPNEGKSVVALNLAGLIASTGKRTLVVDADIRNPGLSRMLTTRQSAGLVE-------VVLDEVPWTQAVKVDTRTKMGILPVS----------TSNQFAHSSELLSSSGMRKFIDSAREACDYIIVDLAPVVPVIDAKAFAPVDGFVFVTEWGKTPIQMVQNLMANEPQIANKT--------LGIVLNKTDMTELQ.............................................................................. 270
8 -21.900[C] COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain  ali follow..  11  1.........................................................................................................MKQVAVISGKGGTGKTTFSATIHALEG-----GVVADCDVDAPNLHILLKPQILKAEDFIASKKARIMPEKCS-ERAIEMENVKTGDLYVSKTEWGYFVHARLKPGEENTGRLVTEVKNRAKEIAEESNAEFLIVDSAPGVGCPVMASLTGVDAAIIVTEPTVSGLSDMLRILELCEHFRIRP---------FVVVNKFDLNVNIASE--IESYCSENGVEFAGR-VPFDKAIPEQIANLNFPFS------------GKAADKMVEIWKKLREVL........ 283
9 -18.000[D] KOG3022 Predicted ATPase, nucleotide-binding  ali follow..  12  61...........................................................................................................KILVLSGKGGVGKSTFSAQLSFALAGMDHQVGLMDIDICGPSIPKMLGLEGQEIHQSNLGWSPVYVED--------------NLGVMSIGFMLPNSDEAVIWRGPRKNG------LIKQFLKDVYGEIDYLVVDAPPGTSDEHISIVTGIDGAIIVTTPQEVSLIDVRKEVSFCKKV--------GVPVLGVVENMLVAKCLTAAEAVQKECVGKWEYRFLGK-FLWIHNFAKQLNKVSHALRITS................................... 294
10 -15.800[P] KOG2825 Putative arsenite-translocating ATPase  ali follow..  12  21............................................................................................................WIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS-TDPAHNLSDAFGTKDARKVPGFDNLSAMEIDPNLSIQEMTEQA---------DQQNPNNPLSGMMQDLAFTIPGIDEALAFAEILKQIKSEFDCVIFDTAPT----TLRFLNFPTVL----------LGKLGGLSSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQELTSYELDPNTTCPQCMARRKMQQKYLAQIEELY........ 289
11 -15.500[P] COG0003 Oxyanion-translocating ATPase  ali follow..  12  1.........................................................................................................MRVILMTG-KGGVGKTSVAAATGLRCAELGHKTLVL-STDPAHSLADSFDLELGHEPRLVKENLWGAELDALMELEGNWGAVKRYITQVLQARGLDGVQAEELAILPGMDEIFGLVRMKRHY----EADYDVLIIDSAPT----ALRLLSLPEVGGWYMRRFYKPLQGMSVALRPLVEPLFRPIAGFSLPDKEVMDAP--YEFYEQIEALEKVLTDNTQTSVRLVTNPEKMVLKESLRAHAYIANRILPETIDDPFFQRWKSNQQVYKQEIYDNF........ 277
12 -10.800[K] KOG1534 Putative transcription factor FET5  ali follow..  11  1........................................................................................................MVKVAAFVCGVASSGKSTFCGALMSYMKSVGRSCHLVN-LDP---AAENFEWEPTVDIRDLISIDDVM----------------EELDYGPNGGLIYCFEFLMENLDW-----------LNEEIGDYDEDY--LIFDMPGQIELYTFAGVLSAMSAMVMMEVPHINLLSKMDLLKDNNNITKAELKRFLNTDPLLLTGEINETTNPKFHELNRCIVQLIDDFNMVNFLPLESGNEESVSRVLSYID...................................... 250
13 -10.600[L] KOG1532 GTPase XAB1, interacts with DNA repair protein XPA  ali follow..  12  1................................................................MDPMESSSEQDIVEESQKLVDSLDKLRVSAASSSSNFKKKPIIIIVV----GGSGKTSFLHRLVCHTFDSKSHGYVVN-LDP---AVMSLPFGANIDIRDTVKYKEVM----------------KQYNLGPNGGILTSLNLFATKFDE-----------VVSVIEKRADQLDYVLVDTPGQIEIFTTEAFASTFPTVVTYVVDTPRSSSPITFMSNM--YACSILYKTRLPLVLAF-NKTDVADHKFALEWMEDFEQSDNSYTATLANSLSLSLYEFYRNIRSVGVSAISGAGMDGFFKAIEASAEEYMETYKADL........ 295
14 -10.200[R] KOG1533 Predicted GTPase  ali follow..  15  9..................................................................................KQLLRVRVYATSEKGENLGSTHWTMYGVLVIGAPGAGKSTFCAGLTDIFSQTKRPFLTIN-LDP---ANDTMAYAPDVNITEMITVNDVM----------------DRLGLGPNGALKYCIETLGANCNW-----------LLQKIEANHKKY--LIIDCPGQLELYKIRFLEKSGVRLCAL---LADSLYCSDPSKFISVALSTLATMVTMEMPQVCLSKAD................................................................................... 205
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205