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Query: gi|16082706|ref|NP_395152.1| hypothetical protein (YPCD1.16c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .
# Score Template Links and tools%idFirst MIMTQPKQTKRRFSPEFKLEAIEQVVKYQRSTIEVARALELDPSQLRKWIRQYKEEVSGMTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAAVLMSEFPIKSLRLast
1 -46.000[L] COG2963 Transposase and inactivated derivatives  ali follow..  27  1.....MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSR--TVAELESEILQLRKALNEARLERDILKKAAVDSICQCNTPFN 100
2 -13.000[L] COG2801 Transposase and inactivated derivatives  ali follow..  19  2...........RYPACEKIEIIRLVEQSTLPVRRTLAQIGVPRATFYRWYDLYQTGGPEALEDRPARRVWNRIPEDVRAAILEMALE.................... 79
3 -11.100[S] COG5484 Uncharacterized conserved protein  ali follow..  8  4.................KHIQAYKDYAKGMKYKDLAEKYGVSVNTIKSWKQR....................................................... 38
4 -10.200[S] COG2442 Uncharacterized conserved protein  ali follow..  15  17..............................VYAEVDKLIGLPAGTAKRWINGYERGGKDHPPILRVTPGATPETRMLAEYRDRRKVPIVRQRAAIEELRAR...... 95
5 -10.100[S] COG1710 Uncharacterized protein conserved in archaea  ali follow..  19  89.........RPRKYSYKTLMMIEELLKKGKTPREISRDLGIPIRTLYYLLKKREVS................................................... 135
6 -9.360[L] COG3415 Transposase and inactivated derivatives  ali follow..  10  21....RIKKLEKDTRVLQRLYFIRYLYR-GMSVEEAAELVGITKATGYTWLKRWNTRGYEGLIPEFGGGRPSKLTKDQKEELKEMLKE.................... 102
7 -9.050[L] COG4584 Transposase and inactivated derivatives  ali follow..  17  6.................DYMEVQILRRQGCSLRAIATETGMAVNTIRKYLVSGAPERKPREPVVGKLEPFKAFIQSRVDA........................... 68
8 -8.800[L] COG3335 Transposase and inactivated derivatives  ali follow..  11  19.QLAGMVRSRSIPAALVMRARLVLAAAAGEPNSEIAERLQLTRATVGKWRARFLERRINGLYDELRPGKPRTIDDERVAEL.......................... 98
9 -8.080[S] COG2964 Uncharacterized protein conserved in bacteria  ali follow..  12  175..IEEVNADRNVSNNAKNRQIVLNLYEKGDAINQVADRLNISKHTVYLYIRQFKSGDFQ................................................ 236
10 -7.720[K] KOG0483 Transcription factor HEX, contains HOX and HALZ domains  ali follow..  17  68....TAAEKKRRLGVE-QVKALEKNFEIDNKLEKLAQELGLQPRQVAIWFQNRRAR---------KTKQLERDYGVLKSNFDALKRNRDSLQRDNDSLLGQ...... 160
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 6 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.