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Query: gi|16082710|ref|NP_395156.1| YopT chaperone (YPCD1.21) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQTTFTELMQQLFLKLGLNHQVNENDVYTFTFEVDGHIQVLIACYHQQWVQLFSELGADLPTNDNLFGEHWPAHVQGRLDGKPILWSQQSLVGLDIDEMQAWLERFIDDIEQRKEPQNTKFQPNSTSPILFILast
1 -6.490[S] COG5465 Uncharacterized conserved protein  ali follow..  7  36......DVIEQVAHSNDWTFERTGDDEIAISVAGNTDYHISFSWMEDFEALHLACA-MRLLSLIN--KLLMGHFDLWQQEGAIMYRQSLLLVEPTSRQVEVLLSAALEACEAYFQAFQFVVWSGVSAREAL. 175
2 -5.650[V] COG1787 Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes  ali follow..  12  54..HEFEDYLFVLLAGLGYNETYQTKKS-------DFGADLLFNDSSGARTVVQAK---SDALGVKAIQEVFTAKVYYQAEKAIVITSAAEVKLIEREALQEIIALF.......................... 163
3 -5.390[S] COG5509 Uncharacterized small protein containing a coiled-coil domain  ali follow..  20  20........................................................................................DELALLSVTEIDQRIALLQSEIERLKAERLKKGDSRAAAEALF. 62
4 -5.230[F] COG4360 ATP adenylyltransferase (5`,5```-P-1,P-4-tetraphosphate phosphorylase II)  ali follow..  9  214GADATLEIYHKLLRAVGLGAVDDDRQSGAYNLLATREWMLIVPRSQEDFQSI--------------------SVNSLGFAGALLVKNESEMQILKQHGPMAILKEV.......................... 299
5 -4.870[R] COG3895 Predicted periplasmic protein  ali follow..  13  1MKNSYSALWGRPAKVVGLGLAIPSYAQETQTYYCSPTETLTIKMVEGSAIQVTLPDGRTVVLPQAESAS-----GNKYSNGFITVWSK............................................ 90
6 -4.380[P] COG0748 Putative heme iron utilization protein  ali follow..  9  1MSEERQQILQAKISTEIVDFRNACQTIQLATVNEKGEPNASYAPFAYHNDCYVVLISEMARHARNLQQVPKVSLMLIEDEKRLTTNAEACLIEKESEEGKQLLAALRQR....................... 118
7 -4.210[S] COG5381 Uncharacterized protein conserved in bacteria  ali follow..  9  80...................................................IANELLENAVKYSTTDHDCPITITLHLYDHKLIFETSNISPLPTTIDYENFIKVLADPLELYMERLEKSALEDCEASQIGL 162
8 -4.000[S] KOG3914 WD repeat protein WDR4  ali follow..  13  187...................AQNPQNSKEEIIITSDKDEHIRISRFPNAFVIEGFCLGHEDFVSRMSLYDNR-TLISGGGDNHVFVWDLENFKCLDAFDLRSAFSTYLSLNQP.................... 278
9 -3.990[O] COG3531 Predicted protein-disulfide isomerase  ali follow..  14  129......PVLRELAVDLGLPADVFDAE------------------ARQSGALTQQHIAASRRLLDRVGGQGYPTFVLEDGEGRMDVVDAGAWLG-RPEAWAQALAQHLAAGTATPAAAGVHEAAPACGPD... 233
10 -3.960[V] COG4845 Chloramphenicol O-acetyltransferase  ali follow..  9  1MGNSYQIIDFETWKRKEYCQIYRSAVQPQYCVSFELDVMNFKRYVKENNLSFTMAFIFAVTKCAN----EIEEFRYRFLDGEVVLYESVDITKVVNVPMQDTIEKFVQLAIVTAENQKEHFTGPVENDVYQF 139
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.