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Query: gi|16082716|ref|NP_395162.1| secreted effector protein (YPCD1.28c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTINIKTDSPIITTGSQLDAITTETVKQSGEIKKTEDTRHEAQAIKSSEASLSRSQVPELIKPSQGINVALLSKSQGDLNGTLSILLLLLELARKAREMGLQQRDIENKATITAQKEQVAEMVSGAKLMIAMAVVSGIMAATSTVASAFSIAKEVKIVKQEQILNSNIAGREQLIDTKMQQMSNIGDKAVSREDIGRIWKPEQVADQNKLALLDKEFRMTDSKANAFNAATQPLGQMANSAIQVHQGYSQAEVKEKEVNASIAANEKQKAEEAMNYNDNFMKDVLRLIEQYVSSHTHAMKAAFGVVLast
1 -11.500[S] COG5613 Uncharacterized conserved protein  ali follow..  11  108..................................................................................IELGKLVSNLEEVRKDIKIAKKIEENQEKIKETEENAKQVKKSGILSAIASVIVGAIMVASGVGAVAGAMMGGSALKCLANIGAKLGANTASLVAKGAEFSAKVAQISTGISNTVGSAVTKLGGSFAGLTMSHAIRTGSQATQVAVGVGSGITQTINNKKQADLQHNNADLALNKADMAALQSIIDRLKEELSHLSESHQQVMELIFQMINAKGDMLHNLAG.. 396
2 -6.250[S] COG1511 Predicted membrane protein  ali follow..  9  150...........................................................................................IDKLKASVSKEVTEQYTKVIFDNFKDIAKGLSDASS---AKKIDDGTKDAKNGSAQLKENLAKLKESTATISTAQLADGAAQVTSGIQSLDSSLGKFQDSSNQIYDKSSQLAAGSGELTSKMNELLAGLQNVQKGTPNLTNGLDQLNSKVQEGSEKAAKAEKIINALDLTKLETAVNNLEKSETAMKEFKKQLTDFENSLKNRDQAFKNVI.... 360
3 -6.160[S] COG2268 Uncharacterized protein conserved in bacteria  ali follow..  13  250..........................................................................................AFMTLEQEQQVKTRTAEQNAKIAAFEAERHREAEQTRILAERQIQETEIEVRSRKVEAEREVRIKEIEQQQVTEIANQTKSIAIAAKSEQQSQAEARANDALADAVRAQQNVETTRQTAEADRAKQVALIAAAQDAETKAVELTVR-AKAEKEAAELQAAAIIELAEATRKKGLAEAEAQRALNDAINKFKLALLQSLPAVIEKSVEPMKSI.... 473
4 -6.040[U] KOG3838 Mannose lectin ERGIC-53, involved in glycoprotein traffic  ali follow..  7  237........................................................................SAATGGLADDHDVFHFTTSLHAAGQVQEQPKVENQEKLTQEYKEYQDKLEKQKQEYKKDHPDEHKDEEDWEEFYESENQRELRQIWQGQSQIADHLRELSRKVDEIIGRQETTLSLVSRNAGQALPPPAAGGVPQQQLPVGAVSRSDVDLLLTNQNMLLSSIREIRQLVGDINVRTDNIQTNQKHAPTAQIQSTGYDVQTLIAEMRDGMNQVKQGITHVGQRLAAPQGA..... 466
5 -5.930[R] COG4980 Gas vesicle protein  ali follow..  6  2............................................................................................................................ASGRSLLTGLFVGG--IIGGAAVLLTAPSSGKQLREKMK-------------------------------------------------------------TNYDSFEETIKRLKSDGLALKDQLIKAAKESTDVIKDVGGELQTSIKKWQEEIKPHQQDLQKEIADIEEKIRQLEKTL.... 116
6 -5.720[T] KOG3725 SH3 domain protein SH3GLB  ali follow..  10  11...................................................................................DAGGFFSRAKQLTEETFLKAERTELDSHFENLLQRADKTEDHTRR-----LLSAIEGYLQPNPTVRMEEVFYEKLELKKDGAIRQNNLEQLSTAMTEAGEQFGETTPYGSALLKVAQTENRLGQAEREFLEGDMKTIQKERKVLNSKRLDLDACKSRLKKAKTVDLQTVTNSKTSGGFTIEQAEADVRVAQAEFDKQSEITKLLLEGIQTAHNNQLKCLRDFV 243
7 -5.680[U] KOG0946 ER-Golgi vesicle-tethering protein p115  ali follow..  10  734............................................................................................RLREEIEELKRNQELLQSQLTEKDSMIENMKS---------------SQTSGTNEQSSAIVSARDSEQVAELKQELATLKSQLNSQSVEITKLQTEKQELLQKTEAFAKSVEVQGETETIIATKTTDVEGRLSALLQETKELKNEIKA-LSEERTAIKEQLDSSNSTIAILQTEKDKLELEITDSKKEQDDLLVLLADQDQKILSLKNKL.... 927
8 -5.620[V] KOG1962 B-cell receptor-associated protein and related proteins  ali follow..  9  59....................................................................................LVIFLLEAIREMRKYSGLQQSNEVHLNVEM-QHSMKLFRAQRNFYISG-VIRRLVNLICTQANLMAQSEASF---------KQAQSATAAARSLLENKNTEKAKEAGEDTTLIELNKLRERVQELTSDLNREKKDKEAVKSQAESINREYDRLTEEYSKLQKKITIGGGGNKD................................................. 227
9 -5.560[S] COG3105 Uncharacterized protein conserved in bacteria  ali follow..  11  18.........................................................................................................................................................................................................................................IGAVAMRFGNRKLRQQQALQYELEKNKAELDEYREELVSHFARSAELLDTMAHDYRQLYQHMAKSSSSLL... 87
10 -5.370[S] KOG2678 Predicted membrane protein  ali follow..  9  7..................................................................................VNIRTLLANCEELAKSEQNFWR---LQKFIKSLDTMLAELEAMGDPQSVKRI------------GYLERLQALKISTGYADVPGSTTKTPSQSSAVSETGENALKEIRQLQNSKYHNELRKELLQDSDALRRRRGADESSSSSGSANVQETSGENMNQAAKYYTNAQEKITEHMLSLTRNLKEQTETANRIIRRDTEVVSRSAGMADRNINSLGKEAEKL.... 212
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 6 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.